Awesome Open Source

Programming Languages

Search results for connectomics

36 search results found

Flood-Filling Networks for instance segmentation in 3d volumes.

Euclidean Distance Transform 3d ⭐ 201

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

Distributed, Versioned, Image-oriented Dataservice

Catmaid ⭐ 167

Collaborative Annotation Toolkit for Massive Amounts of Image Data

Pytorch_connectomics ⭐ 151

PyTorch Connectomics: segmentation toolbox for EM connectomics

Cloud Volume ⭐ 120

Read and write Neuroglancer datasets programmatically.

Qsiprep ⭐ 120

Preprocessing and reconstruction of diffusion MRI

Webknossos ⭐ 116

Visualize, share and annotate your large 3D images online

Kimimaro ⭐ 113

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Skeletor ⭐ 109

3D skeleton extraction from meshes.

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Braingraph ⭐ 94

Graph theory analysis of brain MRI data

KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.

Dotmotif ⭐ 65

A performant, powerful query framework to search for network motifs

Micaopen ⭐ 58

Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

Marching Cubes & Mesh Simplification on multi-label 3D images.

Scalable Optical Flow-based Image Montaging and Alignment

Grandiso Networkx ⭐ 39

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

A unified environment for DNN-based automated segmentation of neuronal EM images

Cython bindings for fpzip, a floating point image compression algorithm.

Cluster_tools ⭐ 30

Distributed segmentation for bio-image-analysis

Brainconn ⭐ 30

Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

Workstation ⭐ 19

Janelia Workstation

Connectomics ⭐ 18

Diluvian ⭐ 14

Flood filling networks for segmenting electron microscopy of neural tissue

Nature_methods_multicut_pipeline ⭐ 11

Compresso ⭐ 10

Compresso: Efficient Compression of Segmentation Data For Connectomics

35_methods_miccai_2017 ⭐ 9

Code for MICCAI 2017 paper

Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data

Awesome Vem Datasets ⭐ 8

Open source volume electron microscopy (vEM) datasets for connectomics.

Support functions for analysis of FAFB EM segmentation

FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution

BIDS app for NeuroData's MRI to Graphs pipeline

1-36 of 36 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.