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Search results for python brain imaging

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32 search results found

Nilearn ⭐ 1,076

Machine learning for NeuroImaging in Python

Workflows and interfaces for neuroimaging packages

Nibabel ⭐ 598

Python package to access a cacophony of neuro-imaging file formats

Neuromaps ⭐ 193

A toolbox for comparing brain maps

Neuromorphic Computing Guide ⭐ 191

Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.

TE-dependent analysis of multi-echo fMRI

Clinicadl ⭐ 146

Framework for the reproducible processing of neuroimaging data with deep learning methods

Bidscoin ⭐ 110

BIDScoin converts your source-level neuroimaging data to BIDS

Mindboggle ⭐ 104

Automated anatomical brain label/shape analysis software (+ website)

Neurovault ⭐ 88

Easy to use web database for statistical maps.

3d Nii Visualizer ⭐ 60

A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5

Deepslice ⭐ 56

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

3D Unet Equipped with Advanced Deep Learning Methods

Netneurotools ⭐ 47

Useful tools from the Network Neuroscience Lab

Brats18 Project ⭐ 42

Brain tumor segmentation using fully-convolutional deep neural networks.

C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.

Brain Coloring ⭐ 38

BrainPainter - Brain Visualisation Software

Synthtorch ⭐ 26

deep neural network-based image translation/synthesis

Brain Mri Segmentation ⭐ 25

Smart India Hackathon 2019 project given by the Department of Atomic Energy

Brain Segmentation ⭐ 24

Brain Segmentation on MRBrains18

Graph_saliency_maps ⭐ 24

Graph saliency maps through spectral convolutional networks for brain mapping

Dash Brain Surface Viewer ⭐ 24

Dash app for viewing brain surfaces saved as MNI files. Data from https://github.com/aces/brainbrowser

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Fmri_roi_analysis_tool ⭐ 10

An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.

Pysnirf2 ⭐ 10

Python package for reading, writing and validating Shared Near Infrared Spectroscopy Format (SNIRF) files

Sub Cortical_segmentation ⭐ 10

Sub-cortical brain tissue segmentation using CNN

A Python software package for BWAS

Residual_mlp_cnn_mixer ⭐ 7

(MICCAI 2022) PyTorch implementation of Denoising of 3D MR images using a voxel-wise hybrid residual MLP-CNN model to improve small lesion diagnostic confidence.

Paint4brains ⭐ 7

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

Automatedfreesurfer ⭐ 5

Stereotaxyz ⭐ 5

Toolkit for the Empirical Design of Stereotactic Brain Implants

Mni_to_atlas ⭐ 5

A simple Python-based tool for finding brain atlas regions based on MNI coordinates.

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