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Search results for python bionlp

26 search results found

Blue_benchmark ⭐ 195

BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

Kindred ⭐ 152

A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).

Multi Bioner ⭐ 129

Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)

Sapbert ⭐ 117

[NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.

NLP framework in python for entity recognition and relationship extraction

Taiyi Llm ⭐ 92

Biomedical LLM, A Bilingual (Chinese and English) Fine-Tuned Large Language Model for Diverse Biomedical Tasks

Named Entity Recognition for biomedical entities

Mediqa2019 ⭐ 45

Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019

Pubrunner ⭐ 29

A framework for keeping biomedical text mining result up-to-date

Data structures and code to read/write BioC XML and Json.

Civicmine ⭐ 19

Text mining cancer biomarkers for the CIVIC database

Biosemble ⭐ 17

AI assembly of bioNLP wordnets

Bioposdep ⭐ 17

Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)

A full-text article retrieval pipeline for biomedical literature.

Pkdocclassifier ⭐ 14

Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo

Vancouver Event and Relation System for Extraction

Biowordlists ⭐ 13

Biomedical wordlists (of drugs, genes, etc) for several text mining projects

PENNER: Pattern-enhanced Nested Named Entity Recognition in Biomedical Literature (BIBM'18)

Mil Rbert ⭐ 11

MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)

Noise Reduction Methods for Distantly Supervised Biomedical Relation Extraction

Mediqa2021 ⭐ 8

Various Documents ⭐ 8

Various documents for deep Learning(Continually updated)

Parallelpymetamap ⭐ 7

This code is to run MetaMap in parallel using Python.

Bc7 Chem Id ⭐ 5

DMIS at BioCreative VII NLMChem Track

Bioner Generalization ⭐ 5

How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?

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1-26 of 26 search results

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