Awesome Open Source

Programming Languages

Search results for python biomedical image processing

biomedical-image-processing x

31 search results found

Tools for computational pathology

Connected Components 3d ⭐ 289

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.

Euclidean Distance Transform 3d ⭐ 201

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

Elektronn3 ⭐ 161

A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

Pytorch Unet ⭐ 154

Tunable U-Net implementation in PyTorch

Pytorch_connectomics ⭐ 151

PyTorch Connectomics: segmentation toolbox for EM connectomics

3dunet Tensorflow Brats18 ⭐ 147

3D Unet biomedical segmentation model powered by tensorpack with fast io speed

A generalizable application framework for segmentation, regression, and classification using PyTorch

Openeit ⭐ 127

Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods

Visual Med Alpaca ⭐ 120

Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.

Cloud Volume ⭐ 120

Read and write Neuroglancer datasets programmatically.

Isic2018 ⭐ 113

ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection

Kimimaro ⭐ 113

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images

Open source Python library for building bioimage analysis pipelines

Promise12_segmentation ⭐ 66

Codes that I have written to complete promise12 prostate segmentation competition.

Dijkstra3d ⭐ 60

Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

Marching Cubes & Mesh Simplification on multi-label 3D images.

Scalable Optical Flow-based Image Montaging and Alignment

Fastremap ⭐ 37

Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

Im2im Uq ⭐ 29

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

Brain Mri Segmentation ⭐ 25

Smart India Hackathon 2019 project given by the Department of Atomic Energy

Ddunet Modified Unet For Wmh With Dense Dilate ⭐ 21

WMH segmentaion with unet, dilated_unet, and with ideas from denseNet

A Python library for biomedical statistical shape and appearance modelling.

Oct Retinal Layer Segmenter ⭐ 18

Bone_fracture_detection_yolov8 ⭐ 13

Fracture Detection in Pediatric Wrist Trauma X-ray Images Using YOLOv8 Algorithm

U Net Reduced With Tf Keras ⭐ 10

Complete U-net Implementation with keras

Binary Pattern Dictionary Learning for gene activation in microscopy images

Tinybrain ⭐ 8

Image pyramid generation for grayscale and segmentation image resize.

Elektronn2 ⭐ 7

A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks, based on Theano

Paint4brains ⭐ 7

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

Abcd Spec ⭐ 6

Application for Big Computational Data Specification (v1.1). This specification provide information on how to write an Application that can run on the open platform

Related Searches

Python Dataset (14,792)

Python Machine Learning (14,099)

Python Tensorflow (13,736)

Python Deep Learning (13,092)

Python Jupyter Notebook (12,976)

Python Algorithms (10,033)

Python Artificial Intelligence (8,580)

Python Pytorch (7,877)

Python Neural (7,444)

Python Convolutional Neural Networks (6,862)

1-31 of 31 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.