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Search results for biomedical image processing

biomedical-image-processing x

44 search results found

Tools for computational pathology

Connected Components 3d ⭐ 289

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.

Euclidean Distance Transform 3d ⭐ 201

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

Elektronn3 ⭐ 161

A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

Pytorch Unet ⭐ 154

Tunable U-Net implementation in PyTorch

Pytorch_connectomics ⭐ 151

PyTorch Connectomics: segmentation toolbox for EM connectomics

3dunet Tensorflow Brats18 ⭐ 147

3D Unet biomedical segmentation model powered by tensorpack with fast io speed

A generalizable application framework for segmentation, regression, and classification using PyTorch

Openeit ⭐ 127

Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods

Visual Med Alpaca ⭐ 120

Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.

Cloud Volume ⭐ 120

Read and write Neuroglancer datasets programmatically.

Isic2018 ⭐ 113

ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection

Kimimaro ⭐ 113

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Pneumonia Detection From Chest X Ray Images With Deep Learning ⭐ 112

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images

Open source Python library for building bioimage analysis pipelines

Promise12_segmentation ⭐ 66

Codes that I have written to complete promise12 prostate segmentation competition.

Dijkstra3d ⭐ 60

Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

Marching Cubes & Mesh Simplification on multi-label 3D images.

Scalable Optical Flow-based Image Montaging and Alignment

Fastremap ⭐ 37

Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

Mesh-based Monte Carlo (MMC)

Skin Lesion Recognition.pytorch ⭐ 32

Rank3 Code for ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection, Task 3

Im2im Uq ⭐ 29

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

Cancer Detection From Microscopic Tissue Images With Deep Learning ⭐ 28

Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels

Brain Mri Segmentation ⭐ 25

Smart India Hackathon 2019 project given by the Department of Atomic Energy

A Python library for biomedical statistical shape and appearance modelling.

Ddunet Modified Unet For Wmh With Dense Dilate ⭐ 21

WMH segmentaion with unet, dilated_unet, and with ideas from denseNet

Oct Retinal Layer Segmenter ⭐ 18

Skin_lesions_classification_dcnns ⭐ 18

Transfer Learning with DCNNs (DenseNet, Inception V3, Inception-ResNet V2, VGG16) for skin lesions classification

Bone_fracture_detection_yolov8 ⭐ 13

Fracture Detection in Pediatric Wrist Trauma X-ray Images Using YOLOv8 Algorithm

Wsisegmentation ⭐ 12

Segmenting WSIs using Deep Convolutional Neural Networks

Bia Course ⭐ 12

A course in biomedical image analytics by Prof. Dmitry V. Dylov

U Net Reduced With Tf Keras ⭐ 10

Complete U-net Implementation with keras

Malaria Detection Using Deep Learning Techniques ⭐ 9

Malaria Parasite Detection using Efficient Neural Ensembles. Malaria, a life threatening disease caused by the bite of the Anopheles mosquito infected with the parasite, has been a major burden towards healthcare for years leading to approximately 400,000 deaths globally every year. This study aims to build an efficient system by applying ensemble techniques based on deep learning to automate the detection of the parasite using whole slide images of thin blood smears.

Tinybrain ⭐ 8

Image pyramid generation for grayscale and segmentation image resize.

Binary Pattern Dictionary Learning for gene activation in microscopy images

Microviewer ⭐ 8

Multiplatform 3D numpy image browser based viewer with voxel painting.

Paint4brains ⭐ 7

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

Elektronn2 ⭐ 7

A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks, based on Theano

📎 About MIDA Project

Abcd Spec ⭐ 6

Application for Big Computational Data Specification (v1.1). This specification provide information on how to write an Application that can run on the open platform

Refinement Of Dl Approaches For Unsupervised Cell Segmentation Classification On Microfluidic Images ⭐ 5

Research internship 2023 at Telecom Paris

Segment White Blood Cell Nuclei ⭐ 5

An algorithm used for white blood cell nuclei segmentation

1-44 of 44 search results

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