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Bids Specification ⭐ 235

Brain Imaging Data Structure (BIDS) Specification

Python tools for querying and manipulating BIDS datasets.

Mne Bids ⭐ 110

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Bidscoin ⭐ 110

BIDScoin converts your source-level neuroimaging data to BIDS

Mne Bids Pipeline ⭐ 106

Automatically process entire electrophysiological datasets using MNE-Python.

Temporal Network Tools

Dmriprep ⭐ 61

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Phys2bids ⭐ 56

Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

Halfpipe ⭐ 56

ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

Remodnav ⭐ 44

Robust Eye Movement Detection for Natural Viewing

Fmriflows ⭐ 42

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

Small Animal Magnetic Resonance Imaging via Python.

Connectomemapper3 ⭐ 39

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Freesurfer ⭐ 35

BIDS app wrapping recon-all from FreeSurfer

Hcppipelines ⭐ 30

A BIDS App for minimal preprocessing using the HCP Pipelines

Sdc Bids Smri ⭐ 20

Structural Neuroimaging Analysis in Python

Sdc Bids Intromri ⭐ 19

Introduction to MRI and BIDS

Pet2bids ⭐ 17

PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side file like .e.g excel sheets

Sdc Bids Dmri ⭐ 16

Introduction to dMRI

This an example app that can serve as a template.

Bids2nda ⭐ 15

A conversion tool for creating NDA compatible metadata representation from BIDS datasets.

Snakebids ⭐ 14

Snakemake + BIDS

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

Estimate/compute high-frequency oscillations (HFOs) from iEEG data that are BIDS and MNE compatible using a scikit-learn-style API.

Hyperalignment ⭐ 12

Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

Bids Tools ⭐ 11

Tools for dealing with neuroimaging data in the BIDS structure

Sdc Bids Fmri ⭐ 9

fMRI Imaging Analysis

Hed Specification ⭐ 8

Specification documents for HED (Hierarchical Event Descriptors)

Predicts brain age, based on data from Freesurfer 5.3

Awesome Bids ⭐ 7

A curated list of awesome BIDS projects, proposals, apps and resources

Brainsuite ⭐ 7

BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

Flexible bidsificator for multimodal datasets

PCP Quality Assessment Protocol

Rs_signal_extract ⭐ 6

BIDS App for resting state signal extraction using nilearn.

Bids Bep016 ⭐ 6

BEP016: diffusion derivatives

GUI for easy MEG to BIDS conversion

Bidsmreye ⭐ 6

BIDS app using deepMReye to decode eye motion for fMRI time series data.

Bids_manager ⭐ 5

BIDS Manage is a software aiming at importing and organising data in BIDS standard

Multiecho ⭐ 5

Combine multiple-echoes from a multi-echo BOLD fMRI acquisition.

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