Awesome Open Source

Programming Languages

Search results for python bacteria

19 search results found

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Ppanggolin ⭐ 191

Build a partitioned pangenome graph from microbial genomes

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

SEER, reimplemented in python 🐍🔮

Pioreactor ⭐ 75

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

Pan-genome wide association studies

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

Prophyle ⭐ 30

Accurate, resource-frugal and deterministic DNA sequence classifier.

PLSDB pipeline to collect bacterial plasmids from NCBI

Order and orientation of complete bacterial genomes

Pathogentrack ⭐ 22

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

Mof Search ⭐ 18

BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours

Targeted Detection and Reconstruction of Plasmids

A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

A spatially explicit trait- and individual-based microbial systems modelling framework

Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁]

Bacterial video tracking & analysis

Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

Related Searches

Python Django (28,897)

Python Machine Learning (20,195)

Python Flask (17,643)

Python Script (17,075)

Python Deep Learning (13,092)

Python Jupyter Notebook (12,976)

Python Database (9,975)

Python Natural Language Processing (9,064)

Python Raspberry Pi (8,403)

Python Graph (6,247)

1-19 of 19 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.