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Search results for protein design
protein-design
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40 search results found
Graphein
⭐
932
Protein Graph Library
Papers_for_protein_design_using_dl
⭐
922
List of papers about Proteins Design using Deep Learning
Paddlehelix
⭐
729
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
Pyrosetta.notebooks
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399
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Lightdock
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234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Proteinflow
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151
Versatile computational pipeline for processing protein structure data for deep learning applications.
Flexs
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112
Fitness landscape exploration sandbox for biological sequence design.
Genie
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106
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
Rita
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69
RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Marks Lab at Harvard.
Chroma Pytorch
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63
Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
Flip
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61
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
Tr Rosetta Pytorch
⭐
54
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
Lambo
⭐
45
Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
Timed Design
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34
Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
Ramanet
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31
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
Deepcriticallearning
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26
Deep Critical Learning. Implementation of ProSelfLC, IMAE, DM, etc.
Gcwgan
⭐
25
Guided Conditional Wasserstein GAN for De Novo Protein Design
Proteinnpt
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24
Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
Lightdock Python2.7
⭐
20
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Cc_protein_origami
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18
Design platform for creating single-chain polyhedral cages made from coiled-coil building modules
Walk Jump
⭐
18
Official repository for discrete Walk-Jump Sampling (dWJS)
Slip
⭐
16
SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
Pdbench
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16
PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
Rosettadesign
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15
RosettaDesign using PyRosetta
Equiformer Diffusion
⭐
14
Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some additional improvements
De Stress
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13
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
Protein Uq
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13
Benchmarking uncertainty quantification methods on proteins.
Funfoldesdata
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12
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
Proteinsolver
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12
Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.
Pose
⭐
10
A bare metal Python library for building and manipulating protein molecular structures
Trdesign Motif
⭐
8
Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/content/10.1101/2020.11.29
Gcgc
⭐
8
An ML-feature processing library for biological sequences.
Directed_evolution
⭐
7
Protein Design by Machine Learning guided Directed Evolution
Prtm
⭐
7
Deep learning for protein science
Ppi Miner
⭐
6
A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
Rosettasilenttoolbox
⭐
6
Python Toolbox For Rosetta Silent Files Processing
Odbo
⭐
6
Bayesian optimization with prescreening of search space via supervised outlier detection
Awesome Protein Design
⭐
5
This repository contains a collection of resources and papers on Protein Design.
Progen
⭐
5
Implementation of the model from "ProGen: Language Modeling for Protein Generation"
Rif
⭐
5
Rotamer Interaction Field Python Libraries for Computational Protein Design
Related Searches
Python Protein Design (28)
Bioinformatics Protein Design (13)
Deep Learning Protein Design (11)
Jupyter Notebook Protein Design (8)
1-40 of 40 search results
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