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23 search results found

React Plotly.js ⭐ 884

A plotly.js React component from Plotly 📈

Dnafeaturesviewer ⭐ 500

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Dash Bio ⭐ 485

Open-source bioinformatics components for Dash

Canvasxpress ⭐ 282

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Karyoploter ⭐ 278

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Pycomplexheatmap ⭐ 182

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

Squigglekit ⭐ 106

SquiggleKit: A toolkit for manipulating nanopore signal data

Dotplot large Genomes in an Interactive, Efficient and Simple way

Geneview ⭐ 51

Genomics data visualization in Python by using matplotlib.

Tailfindr ⭐ 32

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

Locuszoom Standalone ⭐ 30

Create regional association plots from GWAS or meta-analysis

Volcano3d ⭐ 28

An R package to plot interactive three-way differential expression analysis

Ngstools ⭐ 23

My own tools code for NGS data analysis (Next Generation Sequencing)

Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

Data visualization library for creating interactive graphs and dashboards for bioinformatics etc.

A Python package for gene network analysis

Microbiomer ⭐ 17

A comprehensive R package for microbiome analysis.

Manhattan_generator ⭐ 15

Manhattan plot Generator

Phylotrees.jl ⭐ 13

Phylogenetic trees in Julia

Manuscript describing ChronQC is now available online in Bioinformatics

Ramachandraw ⭐ 12

Ramachandran plotting tool

Region Plot ⭐ 12

A tool to plot significant regions of GWAS

genetic distance plotting for recombination events analysis

AccuSyn: An Accurate Web-based Genome Synteny Browser

Deseq2shiny ⭐ 8

a web-based R shiny application that wraps DESeq2 R package

Simple visualisation tool for sequences' similarity in bioinformatics

Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.

Copynumberplots ⭐ 6

R package to create plots representing copy number data using karyoploteR

Plot allele frequencies in VCF files

Galaxy Circos Tool ⭐ 6

DEPRECATED: Merged into https://github.com/galaxyproject/tools-iuc/

Clusterprofshinyora ⭐ 5

A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries

Bioinformatics projects and code shared by Zhi John Lu

Quality control plotting for long reads

Make (build-tool) lesson at Bodega Marine Lab Workshop, February 2016

Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data

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