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Search results for pipeline single cell rna seq

single-cell-rna-seq x

8 search results found

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

integrated RNA-seq Analysis Pipeline

Pipeliner ⭐ 44

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

Pipecomp ⭐ 31

A R framework for pipeline benchmarking, with application to single-cell RNAseq

All-in-one analysis pipeline

An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis

Catd_snakemake ⭐ 11

Snakemake pipeline for benchmarking cell-type deconvolution methods as well as deconvoluting real bulk RNA-seq data with the use of scRNA-seq datasets

Pigx_scrnaseq ⭐ 9

Pipeline for analysis of Dropseq single cell data

Generate the UMI count matrix from CEL-Seq2 sequencing data

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