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reproducibility
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36 search results found
Drake
⭐
1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
Targets
⭐
860
Function-oriented Make-like declarative workflows for R
Open Solution Home Credit
⭐
444
Open solution to the Home Credit Default Risk challenge 🏡
Dna Seq Gatk Variant Calling
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138
This Snakemake pipeline implements the GATK best-practices workflow
Steppy
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134
Lightweight, Python library for fast and reproducible experimentation 🔬
Tarchetypes
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108
Archetypes for targets and pipelines
Vistrails
⭐
92
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Targets Tutorial
⭐
90
Short course on the targets R package
Repeatr
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62
Repeatr: Reproducible, hermetic Computation. Provision containers from Content-Addressable snapshots; run using familiar containers (e.g. runc); store outputs in Content-Addressable form too! JSON API; connect your own pipelines! (Or, use github.com/polydawn/stellar for pipelines!)
Targets Shiny
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60
Example Shiny app containing a targets pipeline.
Drake Examples
⭐
58
Example workflows for the drake R package
Drake
⭐
57
The user manual for the drake R package
Halfpipe
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56
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
Open Solution Googleai Object Detection
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46
Open solution to the Google AI Object Detection Challenge 🍁
Targets Minimal
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45
A minimal example data analysis project with the targets R package
Catalyst Rl
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41
Classification
⭐
35
Catalyst.Classification
Demo Bank Customer Churn
⭐
30
Demo DVC project training a classification model on tabular data
Meetups
⭐
28
Content for ML REPA MeetUps
Segmentation
⭐
27
Catalyst.Segmentation
Rnatoy
⭐
24
A proof of concept RNA-Seq pipeline with Nextflow
Targets Four Minutes
⭐
24
Get started with the {targets} R package in four minutes
Deepnlg
⭐
19
A systematic comparison between pipeline and end-to-end architectures in the RDF-to-text task
Pigx_rnaseq
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19
Pipeline for RNAseq
Smartpipeline
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16
A framework for rapid development of robust data pipelines following a simple design pattern
Targets
⭐
16
User manual of the targets R pacakge
Targetsketch
⭐
15
Sketch a pipeline of targets in an interactive web app
Omission_frontiers
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11
Code for omission frontiers
Mandrake
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11
📖🐉- Bring reading the manual 📖 closer to your drake 🐉 workflow 🔥
Walrus
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11
Containerized data analysis pipelines
Targets Stan
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11
An example project to validate a Stan model in a targets pipeline
Demo Pipeline
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10
Pigx_bsseq
⭐
10
bisulfite sequencing pipeline from fastq to methylation reports
Kts
⭐
10
Interactive ML Toolset
Targets Keras
⭐
7
An example Keras pipeline with the targets R package
Curare
⭐
6
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
Drake Egg Rap
⭐
5
🦆🥚🎤 Demo: {drake} for reproducible pipelines with UK government stats reports
Targets Design
⭐
5
targets R package design specification
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1-36 of 36 search results
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