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Search results for pipeline proteomics

12 search results found

Fragpipe ⭐ 149

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

Ms2rescore ⭐ 32

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

Proteomicslfq ⭐ 32

Proteomics label-free quantification (LFQ) analysis pipeline

Mhcquant ⭐ 28

Identify and quantify MHC eluted peptides from mass spectrometry raw data

Long Read Proteogenomics ⭐ 26

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Maxquant Pipeline ⭐ 19

MaxQuant Automated Pipeline

Paw_pipeline ⭐ 18

A Comet-based, best practices proteomics pipeline.

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Sdrf Pipelines ⭐ 12

A repository to convert SDRF proteomics files into pipelines config files

Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering

Secretsanta ⭐ 9

flexible pipelines for scalable secretome prediction, R package

Nf Encyclopedia ⭐ 5

A NextFlow pipeline for chromatogram library DIA proteomics workflows

Proteomatic ⭐ 5

Proteomatic: a free and accessible Proteomics pipeline

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