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Search results for pipeline nanopore
nanopore
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pipeline
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20 search results found
Pepper
⭐
216
PEPPER-Margin-DeepVariant
Mag
⭐
164
Assembly and binning of metagenomes
Nanoseq
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122
Nanopore demultiplexing, QC and alignment pipeline
Viralrecon
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101
Assembly and intrahost/low-frequency variant calling for viral samples
Pipeline Transcriptome De
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95
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Pipeline Structural Variation
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87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Taxprofiler
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78
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Nanopype
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78
Snakemake pipelines for nanopore sequencing data archiving and processing
Lorean
⭐
62
Long Reads Annotation pipeline
Mpgap
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51
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Bacass
⭐
47
Simple bacterial assembly and annotation pipeline
Strique
⭐
35
Nanopore raw signal repeat detection pipeline
Wochenende
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30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
Pipeline Pinfish Analysis
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22
Pipeline for annotating genomes using long read transcriptomics data with pinfish
Mop2
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20
Master of Pores 2
Nanoflow
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20
🔬 De novo assembly of nanopore reads using nextflow
Porefile
⭐
19
A Nextflow full-length 16S profiling pipeline for ONT reads
Sequence_handling
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12
A series of scripts to automate sequence workflows
Mykrobe_tb_workflow
⭐
5
A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe
Artic Tools
⭐
5
a set of tools for viral amplicon schemes
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1-20 of 20 search results
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