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Search results for pipeline atac seq

19 search results found

Atacseq ⭐ 145

ATAC-seq peak-calling and QC analysis pipeline

Atac_dnase_pipelines ⭐ 135

ATAC-seq and DNase-seq processing pipeline

Seq2science ⭐ 132

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Dolphinnext ⭐ 92

A graphical user interface for distributed data processing of high throughput genomics

Scatac Pro ⭐ 64

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

Pyflow Atacseq ⭐ 37

ATAC-seq snakemake pipeline

Differentialabundance ⭐ 34

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

Atacseq_pipeline ⭐ 25

Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.

Scasat is a single cell ATAC-seq preprocessing and analysis pipeline

Open_pipelines ⭐ 17

Pipelines for NGS data preprocessing by the Bock lab and friends

Pipeline for Universal Mapping of ATAC-seq

Atacproc ⭐ 15

ATAC-seq processing pipeline

Atacflow ⭐ 10

An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter

Cellatac ⭐ 10

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

Preprocessing pipeline for (sc)ATAC data

Enrichment_analysis ⭐ 10

A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.

As_analysis ⭐ 5

A complete Snakemake pipeline for detecting allele specific expression

Genome_tracks ⭐ 5

A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files powered by the wrapper gtracks for the package pyGenomeTracks.

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