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Search results for nim genomics

14 search results found

Somalier ⭐ 224

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

genetic variant expressions, annotation, and filtering for great good.

Hts Nim ⭐ 151

nim wrapper for htslib for parsing genomics data files

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

🚀 seqfu - Sequece Fastx Utilities

don't get DUP'ed or DEL'ed by your putative SVs.

Hts Nim Tools ⭐ 41

useful command-line tools written to show-case hts-nim

Indelope ⭐ 39

find large indels (in the blind spot between GATK/freebayes and SV callers)

Seqcover ⭐ 38

seqcover allows user to view coverage for hundreds of genes and dozens of samples

Genoiser ⭐ 16

Bigwig Nim ⭐ 11

command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig

Fragment-Aware Local Assembly for Short-reads

basepair bio: a single binary with many useful genomics subtools.

Variantkey Nim ⭐ 5

nim-wrapper for variantkey -- (chrom, pos, ref, alt) -> uint64

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1-14 of 14 search results

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