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Search results for nextflow pipelines

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18 search results found

What_the_phage ⭐ 96

WtP: Phage identification via nextflow and docker or singularity

Master_of_pores ⭐ 77

Nextflow pipeline for analysis of direct RNA Nanopore reads

Nextflow Gotchas ⭐ 29

A collection of unexpected challenges and learnings with nextflow and nf-core.

NeoFlow: a proteogenomics pipeline for neoantigen discovery

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

Nextflow pipeline for genome annotation of protein-coding genes

Exllsm Circuit Reconstruction ⭐ 12

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

Cellatac ⭐ 10

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

Bioinformatics ⭐ 10

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.

Vampirus ⭐ 10

Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research

Bettercallsal ⭐ 7

Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.

A nextflow pipeline for performing bacterial RNA-Seq data analysis.

Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow

Tools for processing HIC data.

Nextflow Scif ⭐ 5

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

Nxf Fastqc ⭐ 5

A simple fastp-MultiQC nextflow pipeline

A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

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