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Search results for nextflow variant calling
nextflow
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variant-calling
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13 search results found
Sarek
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299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Viralrecon
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101
Assembly and intrahost/low-frequency variant calling for viral samples
Callings Nf
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76
GATK RNA-Seq Variant Calling in Nextflow
Raredisease
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64
Call and score variants from WGS/WES of rare disease patients.
Deepvariant
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38
Google's DeepVariant variant caller as a Nextflow pipeline
Rnavar
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23
gatk4 RNA variant calling pipeline
Gatk4_best_practice
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18
GATK4 Best Practice Nextflow Pipeline
Exoseq
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10
Please consider using/contributing to https://github.com/nf-core/sarek
Bioinformatics
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10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Vipr
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10
Assembly and intrahost / low-frequency variant calling for viral samples
Mgp1000
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7
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
Nf Ncov Voc
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5
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Nextflow_varcal
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5
Nextflow Tutorial - Variant Calling Edition
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1-13 of 13 search results
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