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Search results for python neuroimaging
neuroimaging
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179 search results found
Sdc Bids Dmri
⭐
16
Introduction to dMRI
Deepbet
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16
Fast brain extraction using neural networks
Nigsp
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15
NiGSP: a module for graph signal processing on neuroimaging data
Neuroparser
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15
Sparse and structured methods for supervised and unsupervised learning on large neuroimaging data
Text2brain
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15
Generating brain activation maps from free-form text query
Freeroi
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14
Software for ROI analysis in neuroimaging
Snakebids
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14
Snakemake + BIDS
Nips2015
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14
Airflow Imaging Plugins
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14
Set of plugins helping to work with imaging data in Airflow.
Python Neuroimaging Lesson
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14
Lessons on neuroimaging analysis with Python
Skbold
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14
Utilities and tools for machine learning on BOLD-fMRI data
Neurocombat
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13
Harmonization of multi-site imaging data with ComBat (Python)
Imaging Transcriptomics
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13
A package, and script, to perform imaging transcriptomics on a neuroimaging scan.
Nmpevqvae
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13
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
Deepsccan
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12
Deep & Sparse CCA for Neuroimaging in Tensorflow
Cfflib
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12
Connectome File Format Library for Multi-Modal Neuroimaging Data and Metadata
Icvmapp3r
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12
AICONSlab's brain extraction (skull-stripping) algorithm using CNNs
Junifer
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12
Forschungszentrum Jülich Neuroimaging Feature Extractor
Neural_pre_processing
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11
Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, skull-stripped brain in a standard coordinate space
Clpipe
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11
Python pipeline for neuroimaging data
Bids Tools
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11
Tools for dealing with neuroimaging data in the BIDS structure
Hypermapp3r
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11
AICONSlab's white matter hyperintensities (WMH) segmentation algorithm using CNNs
Nichart
⭐
10
The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual
Freesurfer Stats
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10
Python Library to Read FreeSurfer's Cortical Parcellation Anatomical Statistics
Fmri_roi_analysis_tool
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10
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
Neuroscience Data Structure
⭐
10
Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to the idea of BIDS in neuroimaging
Bpt
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9
The Brain Predictability toolbox (BPt), is a python based Machine Learning library designed primarily for tabular and neuroimaging specific neuroimaging data but can easily be generalized further.
Xnat Pipelines
⭐
9
XNAT pipelines repository
Juspyce
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9
JuSpyce - a toolbox for flexible assessment of spatial associations between brain maps
Mrqa
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9
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
Sdc Bids Fmri
⭐
9
fMRI Imaging Analysis
35_methods_miccai_2017
⭐
9
Code for MICCAI 2017 paper
Pypes
⭐
9
Reusable neuroimaging pipelines using nipype
Hiwenet
⭐
9
Histogram-weighted Networks for Connectivity & Advanced Analysis in Neuroscience
Neuro_docker
⭐
9
A Dockerfile to create a Ubuntu docker for neuroimaging
Niprov
⭐
9
provenance for neuroimaging data
Mne Ari
⭐
9
All-resolutions Inference for M/EEG in Python
Fitz
⭐
9
Modern Nipype Workflow Management based on Lyman
Psy3018.github.io
⭐
8
Notes de cours pour PSY3018 - Méthodes en neurosciences cognitives
React Fmri
⭐
8
REACT: Receptor-Enriched Analysis of functional Connectivity by Targets
Brainload
⭐
8
A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.
Nisnap
⭐
8
Display segmentation results over MRI scans in Jupyter notebooks.
Handbook
⭐
8
Princeton Handbook for Reproducible Neuroimaging
Hed Specification
⭐
8
Specification documents for HED (Hierarchical Event Descriptors)
Z Brains
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8
z-brains: open software for epilepsy lesion lateralization and localization
Aroma
⭐
7
ICA-AROMA, as a Python package. A work in progress.
Freesurfer Surface
⭐
7
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
Posthoc
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7
Post-hoc modification of linear models
Simple_workflow
⭐
7
A very simple, re-executable neuroimaging publication (code)
Hed Python
⭐
7
Python validation, summary, and analysis tools for HED (Hierarchical Event Descriptors).
Spynoza
⭐
7
python package for fMRI data processing
Neuroimage Tensorflow
⭐
7
This Repository contains development framework for using tensorflow in a neuroimaging analyses
Workshop_cambridge
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6
Content for the workshop in Cambridge 2018
Bids Bep016
⭐
6
BEP016: diffusion derivatives
Bidsmanager
⭐
6
Easily convert to, organize, and manage BIDS imaging data in Python
Pyneurovault
⭐
6
python wrapper for NeuroVault api (in dev)
Biscuit
⭐
6
GUI for easy MEG to BIDS conversion
Pylabber
⭐
6
A base project for research management.
Roodmri
⭐
6
AICONSlab's DL benchmarking platform to OOD data in MRI
Topofit
⭐
6
Rapid, topologically-correct cortical surface reconstruction
Neurolang
⭐
6
Neurolang enables the analysis of NeuroImaging data through probabilistic logic programming. It seamlessly allow to combine, images, databases, and ontologies within a single framework.
Fuimaging
⭐
6
Framework to analyze Neuroimaging data
Sim
⭐
6
A set of helpers to build Apache Spark pipelines for Neuroimaging
Pydra Freesurfer
⭐
6
Pydra tasks for FreeSurfer
Django_mri
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6
A reusable Django app to manage MRI data.
Dac2bids
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6
Create a BIDS structure for a DICOM folder.
Wbplot
⭐
5
Automated plotting of neuroimaging maps from Python using Connectome Workbench.
Deeprad
⭐
5
A deep learning python package for medical imaging data.
Pymeg
⭐
5
Python NeuroImaging software
Neuroimaging_with_python
⭐
5
Neuroimaging data analysis using ML tools with Python.
Neurocombat_sklearn
⭐
5
Implementation of Combat harmonization method with scikit-learn compatible format
Rglcg
⭐
5
Relating Global and Local Connectome Changes to Dementia and Targeted Gene Expressions in Alzheimer’s Disease
Mni_to_atlas
⭐
5
A simple Python-based tool for finding brain atlas regions based on MNI coordinates.
Adni_visualize
⭐
5
Self-supervised learning for understanding of morphological features in classification of fMRI images from the Alzheimer's Disease Neuroimaging Initiative (ADNI) database
Automatedfreesurfer
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5
Nondefaced Detector
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5
Identify non-defaced datasets before publication
Pathmatcher
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5
Pathmatcher - Manipulate file paths trees like simple text using powerful regular expressions!
Markello_spatialnulls
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5
Code and documentation supporting Markello & Misic, 2021, "Comparing spatially-constrained null models of parcellated brain maps" (NeuroImage)
Afniglmprep
⭐
5
afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.
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