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Search results for network protein
network
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protein
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39 search results found
Graphia
⭐
209
A visualisation tool for the creation and analysis of graphs
Netmf
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134
Network Embedding as Matrix Factorization: Unifying DeepWalk, LINE, PTE, and node2vec
Pecanpy
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133
A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec
Lasagne4bio
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88
Netzoor
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85
netZooR is a network biology package implemented in R.
Omnipathr
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80
R client for the OmniPath web service
Carnival
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48
CAusal Reasoning for Network Identification with integer VALue programming in R
Deepgo
⭐
45
Function prediction using a deep ontology-aware classifier
Trdesign
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44
trRosetta for protein design
Graphsol
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33
Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map"
Broccoli
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24
orthology assignment using phylogenetic and network analyses
Deepnf
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23
Deep Network Fusion (deepNF)
Omicsintegrator2
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20
Prize-Collecting Steiner Forests for Interactomes
Deep Learning For Contact_map_v2
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19
Prediction of protein contact map
Sjaracne
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19
Scalable Tool for Gene Network Reverse Engineering
Pytorch Rgn
⭐
19
Recurrent Geometric Network in Pytorch
Netsmooth
⭐
18
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
Correlationplus
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18
A Python package to calculate, visualize and analyze correlation maps of proteins.
Blockmodel
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16
Fitting stochastic blockmodels to graphs
Emap2secplus
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15
Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning
Egad
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13
Gene network analysis
Proteinsolver
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12
Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.
Pathways
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12
Disease pathways in the human interactome
Photon
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11
PHOsphoproteomic dissecTiOn using Networks
Pathlinker
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11
Connect the dots in networks.
Stringapp
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9
Cytoscape interface to STRING and STITCH
Hivepanelexplorer
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9
An interactive and explorative visualization tool in D3 based on hive plots built for complex networks.
Netics
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9
NetICS: network-based integration of multi-omics data for prioritizing cancer genes
Pathfx
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8
Most up to date PathFX code
Ponder
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8
PointNet for Deep Rank: protein-protein interaction scoring using neural networks
Capnetprotstruct
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7
Capsule Networks for improving protein secondary structure prediction accuracy
Smiles Neural Network
⭐
7
A neural network for predicting properties of molecules based on their SMILES representation
Deepdtnet
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7
Convolutional Generative Stochastic Network For Protein Secondary Structure Prediction
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7
An implementation for Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction, https://arxiv.org/abs/1403.1347
Munk
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7
A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks
Clans
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6
CLANS 2.0 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes the dynamic clustering process and enables the user to interactively control it and explore the cluster map in various ways.
Jbcb2018
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6
Geneplexus
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6
Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
Skipgnn
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6
SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks
Deep Learning For Drug Protein Interactions
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5
A Python implementation for training a neural network for predicting drug-protein interactions using Keras and Tensorflow
K Core Subgraph
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5
Finding the Highest K-Core Subgraph in a Protein-Protein Interaction Network
Protein_structure_prediction
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5
Using recurrent and convolutional neural networks to predict protein secondary structures
Biographs
⭐
5
Python class to easily deal with protein networks.
Predicting Dtis
⭐
5
Employing edge2vec node embedding algorithm to represent the network
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1-39 of 39 search results
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