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Search results for metagenomic analysis
metagenomic-analysis
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21 search results found
Ggpicrust2
⭐
59
Make Picrust2 Output Analysis and Visualization Easier
Metacache
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49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Mg Rast
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42
The MG-RAST Backend -- the API server
Metagmisc
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40
Miscellaneous functions for metagenomic analysis.
Strainy
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33
Graph-based assembly phasing
Stag Mwc
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24
StaG Metagenomic Workflow Collaboration
Lrbinner
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22
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
Pipeline V5
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19
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Mercat
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18
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
Rna_virus_detector
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18
VirBot: a protein-based RNA virus detector for metagenomic data
Microbiomestat
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18
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Orna
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17
Fast in-silico normalization algorithm for NGS data
Conifer
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14
Calculate confidence scores from Kraken2 output
Imap
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13
iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
Genome On Diet
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11
Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).
Raspir
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10
Raspir, the rare species identifier
Carnelian
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8
Mercat2
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6
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
Seq2vec
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6
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
Rmeta
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5
collect the R function for daily work
Metagenomics
⭐
5
🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean
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