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Search results for bioinformatics metagenomic analysis

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7 search results found

Metacache ⭐ 49

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Lrbinner ⭐ 22

LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.

Rna_virus_detector ⭐ 18

VirBot: a protein-based RNA virus detector for metagenomic data

Genome On Diet ⭐ 11

Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).

Raspir, the rare species identifier

Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!

Metagenomics ⭐ 5

🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean

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