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Search results for metabolic reconstruction
metabolic-reconstruction
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13 search results found
Cobratoolbox
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232
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Gapseq
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131
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
Memote
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117
memote – the genome-scale metabolic model test suite
Raven
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87
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Cnapy
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36
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Corda
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20
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Kemet
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15
KEGG Module Evaluation Tool
Omixer Rpm
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7
A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
Omixer Rpmr
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7
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
Meneco
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7
Ⓜ️ Metabolic network completion
Dexom
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5
Diversity-based enumeration of optimal context-specific metabolic networks
Yarrowia_lipolytica_w29 Gem
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5
Genome-scale model of Yarrowia lipolytica.
Memote M Capsulatus
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5
Genome-scale metabolic model of Methylococcus capsulatus.
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1-13 of 13 search results
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