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Search results for metabarcoding
metabarcoding
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24 search results found
Vsearch
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605
Versatile open-source tool for microbiome analysis
Dada2
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428
Accurate sample inference from amplicon data with single nucleotide resolution
Ampliseq
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141
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Decontam
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122
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Metacoder
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121
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
Swarm
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110
A robust and fast clustering method for amplicon-based studies
Pr2database
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57
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
Barque
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25
Environmental DNA metabarcoding taxonomic identification
Boldigger
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24
A python package to query different databases of boldsystems.org
Jamp
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24
JAMP - Just Another Metabarcoding Pipeline
Primerminer
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22
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
Co1classifier
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22
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
Dadaist2
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11
Dadaist2 🟨 Highway to R
Samba
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10
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
Pewo
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10
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
Metabar
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9
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
Meta Barcoding Dual Indexing
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9
Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods
Rappas
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9
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
Miscmetabar
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7
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
Bcdatabaser
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6
A pipeline to create reference databases for arbitrary markers and taxonomic groups from NCBI data
R_tutorials
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6
Tutorials for R
Nextits
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5
A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
Edna_metabarcoding
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5
Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
Coi_ncbi_2018
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5
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
Related Searches
R Metabarcoding (14)
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Pipeline Metabarcoding (8)
Metagenomics Metabarcoding (7)
Database Metabarcoding (7)
Metabarcoding Edna (6)
Taxonomy Metabarcoding (5)
Perl Metabarcoding (5)
Dna Metabarcoding (5)
1-24 of 24 search results
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