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12 search results found

Sigprofilerextractor ⭐ 132

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Toolbox for comparative genomics of MAGs

Visualization and annotation of CNVs from population-scale whole-genome sequencing data

A set of tools for modelling ancestry patterns along the genome.

A whole-genome and alignment-free prokaryotic phylogeny tool

Helmsman ⭐ 19

highly-efficient & lightweight mutation signature matrix aggregation

Chromeister ⭐ 16

A dotplot generator for large chromosomes

Snaptools ⭐ 11

A module for working with snap files in Python

Disty McMatrixface - compute a distance matrix from a core genome alignment file

Split Seq Pipeline ⭐ 6

Find CRISPRS in genomes using pilercr & draws a matrix

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