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Search results for jupyter notebook manuscript
jupyter-notebook
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49 search results found
Selene
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349
a framework for training sequence-level deep learning networks
Palantir
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184
Single cell trajectory detection
Proteinfer
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110
Deep networks for protein functional inference
Evolution
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82
This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
Tutorials 2017
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52
Geophysical Tutorials column for 2017
Living Documents
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47
How to use Jupyter notebooks and R markdown to create living documents and reproducible reports.
Paper Template
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37
Template for a new paper repository with code, data, and a LaTeX manuscript. Use the Github "Import repository" to create a new paper.
Cosmogan
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24
Sapy
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24
Python code and data to the manuscript "Hands-on Signal Analysis with Python"
Vibrationtesting
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21
Vibration Testing module affiliated with the in-progress manuscript Vibration Testing with Modal Analysis and Health Monitoring- Python version
Rambutan
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20
Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
Reproducible Research
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16
Gt Dimred
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15
Genotype dimension reduction research. Code for manuscript "UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts"
Smartas
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13
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Perovskite Stability
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13
Deep_nlp
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12
Ws 18 19 Deep Learning Tutorial
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12
Deep Learning and Artificial Intelligence Tutorial @ LMU WS 2018/19
Whitenoiseanalysis
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12
Code for computing the hidden biases in deep networks and its applications
Grimoirelab Manuscripts
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12
Bitergia reports engine
Immune Subtype Clustering
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11
This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
Benchmark Fdr
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11
Benchmarking study of recent covariate-adjusted FDR methods
Spreading Correction
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11
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries", Anton J.M. Larsson, Geoff Stanley, Rahul Sinha, Irving L. Weissman and Rickard Sandberg
Gutenberg Analysis
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10
Analysis of gutenberg dataset
Huri_paper
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9
Code for the analyses in the human reference interactome paper.
Myelinconnect
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9
Totalvi_reproducibility
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9
Ecocnn
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9
A CNN for remotely sensed imagery, with emphasis on the IO pipeline to construct and apply the model.
California Mosquito Study
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8
Source code and data supporting our eLife manuscript on single mosquito sequencing (https://elifesciences.org/articles/68353)
Ss18 Machine Learning Tutorial
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8
LMU Summer Semester 2018 Machine Learning Tutorial Materials
Fca_bone_marrow
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8
This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune development in human fetal bone marrow and in Down syndrome" (Nature, 2021).
Cohorts
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7
A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data
Factorizedembeddings
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7
American Gut Analyses
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7
Single Cell Studies
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7
Example analysis using the 'Single cell studies database'
Gene Ages
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7
Consensus ages for genes
Paper Supplement Standard Problem Dmi
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6
Electronic and additional information for manuscript on micromagnetic standard problem DMI
Evolimmune
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6
Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"
Snpstr Imputation
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6
Scripts for analyses and figures for SNP STR Imputation manuscript
Emll
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6
some code for linlog model simulation
Sci2017_analysis
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5
Data and analysis scripts for Matson et al. 2017 manuscript
Probmodelsdnns
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5
Envision2017
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5
We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. All data and software in this study are freely available. The training data set and all code used to train the models and generate the figures presented in this manuscript are available here. Envision predictions, along with feature annotations, are available at https://envision.gs.washington.edu/.
Uorf_repressiveness_supplemental
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5
Data and iPython notebooks documenting all analysis for manuscript "Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish", by Guo-Liang "Chewie" Chew, Andrea Pauli and Alexander F. Schier, 2016
Tcga_subtype_classification
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5
Detecting cancer subtypes with machine learning.
Manuscript Object
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5
Data extraction, transformation, manipulation, and analysis of the Making and Knowing Project's core dataset of the Digital Critical Edition, Secrets of Craft and Nature.
Covid 19_multi Omics
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5
A repository for collaborative multi-omics data analysis & the covid-omics.app
All Active Manuscript
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5
Code for reproducing the figures presented in: Single-neuron models linking electrophysiology, morphology and transcriptomics across cortical cell types
Blimey
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5
Jupyter notebooks to reproduce various bLIMEy experiments
3d Csem Open Source Landscape
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5
Werthmüller, D., R. Rochlitz, O. Castillo-Reyes, and L. Heagy, 2021, Towards an open-source landscape for 3-D CSEM modelling: Geophysical Journal International, 227(1), 644--659
Impedanceanalyzer Manuscript
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5
A repository containing all of the code and data for the analysis and figures of our ImpedanceAnalyzer manuscript
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1-49 of 49 search results
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