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23 search results found

Graphein ⭐ 932

Protein Graph Library

3dmol.js ⭐ 720

WebGL accelerated JavaScript molecular graphics library

Jupyter_dock ⭐ 215

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

Variational Autoencoder for Dimensionality Reduction of Time-Series

Tangram ⭐ 153

Spatial alignment of single cell transcriptomic data.

Fitness landscape exploration sandbox for biological sequence design.

Computational Cryoem ⭐ 73

A curated list of awesome computational cryo-EM methods.

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Glycowork ⭐ 46

Package for processing and analyzing glycans and their role in biology.

Protein Transformer ⭐ 25

Predicting protein structure through sequence modeling

Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)

Teaching ⭐ 20

Courses & workshops led by members of the Krishnan Lab.

A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions

Bioinformatics ⭐ 17

Course materials for Computational Biology and Bioinformatics - BI462

Asapdiscovery ⭐ 15

Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium

DeepSEA in TensorFlow

Sars Cov 2_b.1.1.529_spike Rbd_predictions ⭐ 14

AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions

Deep Learning Health Life Sciences ⭐ 8

Workshop on Deep Learning for Health and Life Sciences

Julia Theosysbio ⭐ 8

Cryo Ralib ⭐ 8

Optimus_bind_sample ⭐ 7

Designed to optimize the time/accuracy trade-off in predicting the effects of mutations on protein-protein binding

Iscb Diversity ⭐ 7

Analyzing diversity of ISCB keynote speakers & fellows compared to the field of bioinformatics

Genomenlp ⭐ 5

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