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52 search results found

Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science

Clustergrammer ⭐ 228

An interactive heatmap visualization built using D3.js

Build, share, and embed visualizations of metabolic pathways.

Poseidon ⭐ 148

poseidon system - open source syringe pumps and microscope for laboratories

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Clustergrammer2 ⭐ 99

"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.

Tutorial ⭐ 94

Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)

Tigerlily ⭐ 90

TigerLily: Finding drug interactions in silico with the Graph.

Lasagne4bio ⭐ 88

Python Bioimage Analysis Tutorial ⭐ 72

A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.

Netzoopy ⭐ 71

netZooPy is a network biology package implemented in Python.

Github Paper ⭐ 53

Plos in Computational Biology paper related with github for researchers, code, source and document

Full_spectrum_bioinformatics ⭐ 47

An open-access bioinformatics text

CellBox: Interpretable Machine Learning for Perturbation Biology

A machine learning tool to improve the effectiveness of strain engineering in synthetic biology

Python Zero To Hero Beginners Course ⭐ 39

Materials for a Python Beginner's Course. First given at the Royal Society of Biology. Designed and delivered by Chas Nelson and Mikolaj Kundegorski.

Deep Learning For Biology Hse 2018 Course ⭐ 29

Deep Learning for Biology course materials / Higher School of Economics, 2018

Plantsandpython ⭐ 23

Course material for the Foundation in Computational Plant Science course at Michigan State University

Introtobiophysics ⭐ 23

Introduction to Biophysics, requires one semester of calculus-based Physics.

Ai For Bio ⭐ 21

A free and collaborative space for Machine Learning applied to Biology

Teaching ⭐ 20

Courses & workshops led by members of the Krishnan Lab.

2018 Opensourcebioreactor ⭐ 19

Open Source Bioreactor (Biomaker Challenge 2018)

W17.machinelearning ⭐ 19

Course material for the Collaboratory Workshop "Machine Learning with Python"

Bioinformatics ⭐ 17

Course materials for Computational Biology and Bioinformatics - BI462

a short graduate population biology course

Plos_biology_2018_ignored_genes ⭐ 11

Software to study why most genes are ignored

Introduction to Python Programming

'h'omeworks, 'a'ssignments 'tex' for courses at USC

Course material for CB2030

Inter Climate_changes ⭐ 10

uma proposta de sequência didática interdisciplinar que tem como base as mudanças climáticas e aquecimento global

Detection Of Plant Disease ⭐ 9

A plant disease detector (classifier) based on the PlantVillage dataset

Human_5utr_modeling ⭐ 9

Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.

Biopycourse ⭐ 8

Python short course for graduates in biology and biochemistry

Url_genie ⭐ 8

Malicious URL Detection Model NN optimized by Genetic Algorithms 🧬

Public_notebooks ⭐ 8

Repository of Jupyter Notebooks created by the Bio2Byte group

Julia Theosysbio ⭐ 8

D N N_health Care ⭐ 7

Python Computational Natural Sciences ⭐ 7

🔬 Python Scripts for applications in Natural Sciences (Physics, Biology, Chemistry). Updating on a regular basis.

Bioinfo_programmingchallenges ⭐ 7

A BioRuby-based course for the Computational Biology M.Sc. Programme

See Segment ⭐ 6

Simple Evolutionary Exploration - Image Segmentation

Writingsimulators ⭐ 6

Systems biology practical on writing simulators with F# and Z3

Intro_python_ismb2022 ⭐ 6

Get Articles Meaning ⭐ 6

Getting meaning out of scientific articles using nltk/gensim and scikit-learn

2020_grant ⭐ 6

Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper

Gaitstudio ⭐ 6

Based on the Kinect depth camera and MediaPipe, real-time reasoning of the joint activity of each part of the human body, and output a detection report.

Tsri Lecture ⭐ 5

Course material for TSRI network biology lecture

Cbb Retreat ⭐ 5

Two hour mini-lesson based on Reproducible Science Curriculum material

Sysbioshortcourse ⭐ 5

Nematoda Te Evolution ⭐ 5

Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

Methylize ⭐ 5

Python-based Illumina methylation array analysis software

Appliedgenomics2020 ⭐ 5

Description Materials for Spring 2020 Applied Genomics Course

Mybiotools ⭐ 5

Python scripts for biologists

PhD Course 2020 Systems Biology of Human Metabolism and Gut Microbiome (3 ECTS)

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