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Search results for java ngs
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24 search results found
Jvarkit
⭐
440
Java utilities for Bioinformatics
Htsjdk
⭐
271
A Java API for high-throughput sequencing data (HTS) formats.
Ngb
⭐
151
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
Cloud Pipeline
⭐
137
Cloud agnostic genomics analysis, scientific computation and storage platform
Trimmomatic
⭐
74
Read trimming tool for Illumina NGS data.
Abra2
⭐
69
ABRA2
Haplogrep Cmd
⭐
64
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
Seqmonk
⭐
45
SeqMonk NGS visualisation and analysis tool
Lrscaf
⭐
34
TGS scaffolding
Disq
⭐
31
A library for manipulating bioinformatics sequencing formats in Apache Spark
Seqware
⭐
27
This is the SeqWare Project's main repo.
Pheno4j
⭐
24
Pheno4j: a graph based HPO to NGS database
Pathos
⭐
22
PathOS is a clinical application for filtering, analysing and reporting on NGS variants
Ngs
⭐
17
Next generation sequencing (NGS/HTS) tools.
Hpg Bigdata
⭐
17
This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
Damageprofiler
⭐
15
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
Virapipe
⭐
13
ViraPipe is a Apache Spark based scalable pipeline for metagenome analysis from NGS read data
Cliquesnv
⭐
13
Bg7
⭐
13
bacterial genome annotation system
Seal
⭐
7
Hadoop-based suite of tools for processing NGS data
Nats Spring Boot Starter
⭐
7
Spring Boot starter for NATS
Fonda
⭐
7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
Mitobench
⭐
6
The mitochondrial workbench
Megapath
⭐
5
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
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