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Search results for image processing microscopy
image-processing
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microscopy
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26 search results found
Relion
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400
Image-processing software for cryo-electron microscopy
Cucim
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282
cuCIM - RAPIDS GPU-accelerated image processing library
Oad
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111
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Awesome Biological Image Analysis
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74
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Pycytominer
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60
Python package for processing image-based profiling data
Gpim
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53
Gaussian processes and Bayesian optimization for images and hyperspectral data
Deconvoptim.jl
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48
A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.
Sparse Sim
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45
Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
Libapr
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45
Library for producing and processing on the Adaptive Particle Representation (APR).
Spatialtranscriptomics
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34
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Threedeconv.jl
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25
A convex 3D deconvolution algorithm for low photon count fluorescence imaging
Sparse Deconv Py
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24
Official Python implementation of the 'Sparse deconvolution'-v0.3.0
Llspy
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23
Lattice light-sheet post-processing utility.
Flika
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20
An interactive image processing program for biologists written in Python.
Symbac
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18
Accurate segmentation of bacterial microscope images using synthetically generated image data.
Pyapr
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14
Content-adaptive storage and processing of large volumetric microscopy data using the Adaptive Particle Representation (APR)
Exllsm Circuit Reconstruction
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12
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
Deep Learning Super Resolution Image Reconstruction Dsir
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12
Deep-Learning convolutional auto-encoders applied to super-resolution microscopy data to localization image reconstruction.
Cryosparc2_public
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12
CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.
Actk
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11
Automated Cell Toolkit
Sacd
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11
Source code of SACD(Super-resolution with Auto-Correlation two-step Deconvolution)
Nanomesh
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9
Python workflow tool for generating meshes from 2D and 3D image data
Zfvascularquantification
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8
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
Compactionanalyzer
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6
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
Czitools
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5
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.
Napari Apr Viewer
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5
Create and view APR images in napari
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1-26 of 26 search results
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