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Medical image processing in Python

A framework for high-performance medical image processing, neural network inference and visualization

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

Brainstools ⭐ 95

A suite of tools for medical image processing focused on brain analysis

This is the repository for the BioImage Suite Web Project

Pydata Medical Image ⭐ 66

A Deep Learning talk+tutorial for medical image processing

Medimg_py_library ⭐ 65

A python library for medical image processing, built by the medical imaging group of Dalian Univerisity of Technology, China

Segment Open ⭐ 52

Segment Source Distribution

Medicalimagesegmentation ⭐ 45

This repository aims at containing all the code employed at LIVIA to segment medical images. Mainly, our research focuses on bringind the expertise in deep learning and optimization techniques to the medical image analysis domain.

Slicercustomapptemplate ⭐ 38

Template to be used as a starting point for creating a custom 3D Slicer application

Osparc Iseg ⭐ 38

The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data

Medical Image Radiomics Processor

Awesome Medical Imaging ⭐ 26

Awesome list of software that I use to do research in medical imaging.

Tutorials ⭐ 24

Here, we will be showcasing our seminar series “CPP for Image Processing and Machine Learning” including presentations and code examples. There are image processing and machine learning libraries out there which use C++ as a base and have become industry standards (ITK for medical imaging, OpenCV for computer vision and machine learning, Eigen for linear algebra, Shogun for machine learning). The documentation provided with these packages, though extensive, assume a certain level of experience

Coursera Ai For Medicine Specialization ⭐ 22

Programming assignments, labs and quizzes from all courses in the Coursera AI for Medicine Specialization offered by deeplearning.ai

Wsi Analysis ⭐ 21

Python scripts for automatic Whole-Slide Image preprocessing.

Medutils ⭐ 14

Collection of useful functions for medical image processing and reconstruction

Opensoft18 ⭐ 12

Repository for the Gold-winning OpenSoft 2018 submission 🎉

Fast Registration Of image Groups

Scientific Visualisation Made Easy

Medical Image Processing ⭐ 9

Image Processing with Deep Learning at Computational Radiology Lab

Image Segmentation With Snake Active Contour Algorithm ⭐ 8

Image Segmentation with Snake (Active Contour) Algorithm

Numpy_array_to_tfrecords ⭐ 7

TFRecord converter for numpy array data (e.g. 3D images for medical image processing)

Advanced Medical Image Processing ⭐ 7

A package for all projects of Medical Image processing at Vanderbilt (papers are in google drive)

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