Awesome Open Source

Programming Languages

Search results for haplotypes

16 search results found

Octopus ⭐ 285

Bayesian haplotype-based mutation calling

Vcf Simplify ⭐ 45

A python parser to simplify and build the VCF (Variant Call Format).

ClairS - a deep-learning method for long-read somatic small variant calling

An algorithm for recovering haplotypes from metagenomes

Haploclique ⭐ 21

Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.

Starfish ⭐ 17

Intersect multiple VCF files with haplotype awareness

Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

Minorseq ⭐ 14

Minor Variant Calling and Phasing Tools

Cliquesnv ⭐ 13

Phase Extender ⭐ 13

A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.

Edgecase ⭐ 13

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

An efficient genetic data imputation pipeline

Split a BAM file by haplotype support

Reads2map ⭐ 6

WDL workflows to build genetic maps from sequencing reads

Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)

Nanopore Methylation ⭐ 5

Long sequencing reads classifier

Related Searches

Python Haplotypes (7)

Bioinformatics Haplotypes (7)

Variants Haplotypes (7)

Haplotypes Phasing (6)

Vcf Haplotypes (6)

C Plus Plus Haplotypes (4)

Genomics Haplotypes (4)

Ngs Haplotypes (3)

Haplotypes Haplotype Assembly (3)

Haplotypes Haplotype Blocks (3)

1-16 of 16 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.