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Search results for graph genomics
genomics
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graph
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16 search results found
Vg
⭐
1,022
tools for working with genome variation graphs
Hifiasm
⭐
443
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Minigraph
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367
Proof-of-concept seq-to-graph mapper and graph generator
Canvasxpress
⭐
282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
Gfatools
⭐
181
Tools for manipulating sequence graphs in the GFA and rGFA formats
Fermi Lite
⭐
67
Standalone C library for assembling Illumina short reads in small regions
Gatb Core
⭐
61
Core library of the Genome Analysis Toolbox with de-Bruijn graph
Raptor
⭐
50
Graph-based mapping of long sequences, noisy or HiFi.
Twopaco
⭐
39
A fast constructor of the compressed de Bruijn graph from many genomes
Libbdsg
⭐
29
Optimized sequence graph implementations for graph genomics
Genomegraphs.jl
⭐
29
A modern genomics framework for julia
Stratipy
⭐
29
Graph regularized nonnegative matrix factorization (GNMF) in Python
Chromegcn
⭐
16
Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
Svaha2
⭐
14
Linear-time, low-memory construction of variation graphs
Gwasdiversitymonitor
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14
Source code for the GWAS Diversity Monitor
Blastgraph
⭐
13
Genomics Workspace
⭐
11
Django website project for common sequence search tools.
Topsorter
⭐
10
Graphical assessment of structrial variants using 10x genomics data
Algebra
⭐
10
A Boolean Algebra for Genetic Variants
Canvasxpress Js
⭐
6
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
Goetia
⭐
6
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
Bovine Graphs
⭐
6
Integrate multiple genome assemblies into a pangenome graph
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