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9 search results found

Genomeworks ⭐ 276

SDK for GPU accelerated genome assembly and analysis

Arioc: GPU-accelerated DNA short-read alignment

Mandrake ⭐ 34

Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

Segalign ⭐ 26

A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC4140

Bigcomputelabs ⭐ 20

Big Compute Learning Labs

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment.

Human_genomics_pipeline ⭐ 15

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

Faster_lmm_d ⭐ 12

A faster lmm for GWAS. Supports GPU backend.

HAT is a set of tools for calling de novo variants from whole-genome sequencing data.

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