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14 search results found

Plant Seg ⭐ 81

A tool for cell instance aware segmentation in densely packed 3D volumetric images

Cell_blast ⭐ 74

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

Rapids_singlecell ⭐ 66

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

Arioc: GPU-accelerated DNA short-read alignment

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Deep Learning based cell composition analysis with Scaden.

Megadock ⭐ 38

An ultra-high-performance protein-protein docking for heterogeneous supercomputers

GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment

Soap3 Dp ⭐ 24

To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.

R package – HLA Genotype Imputation with Attribute Bagging (development version only)

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment.

Cnnpeaks ⭐ 13

The ChIP-Seq peak calling algorithm using convolution neural networks

Faster_lmm_d ⭐ 12

A faster lmm for GWAS. Supports GPU backend.

Mummergpu ⭐ 7

Fork of MUMmerGPU-2.0 that compiles without errors

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