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38 search results found

Openemr ⭐ 2,502

The most popular open source electronic health records and medical practice management solution.

Collect ⭐ 697

ODK Collect is an Android app for filling out forms. It's been used to collect billions of data points in challenging environments around the world. Contribute and make the world a better place! ✨📋✨

Hospitalrun ⭐ 500

Monorepo that holds all of HospitalRun's v2 projects.

Rapid large-scale prokaryote pan genome analysis

Circlator ⭐ 193

A tool to circularize genome assemblies

Artemis ⭐ 191

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Snp Sites ⭐ 173

Finds SNP sites from a multi-FASTA alignment file

Covid 19_unified Dataset ⭐ 168

Unified COVID-19 Dataset

Gubbins ⭐ 154

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Antimicrobial Resistance Identification By Assembly

ODK Build is a drag-and-drop form designer for ODK XForms. Thousands of users around the world depend on it for their data collection campaigns. Contribute and make the world a better place! ✨📝✨

Assembly Stats ⭐ 92

Get assembly statistics from FASTA and FASTQ files

Czid Web ⭐ 75

Infectious Disease Sequencing Platform

Openlmis Ref Distro ⭐ 62

OpenLMIS v3+ Reference Distribution. Last mile health commodity information system.

Briefcase ⭐ 62

ODK Briefcase is a Java application for fetching and pushing forms and their contents. It helps make billions of data points from ODK portable. Contribute and make the world a better place! ✨💼✨

Javarosa ⭐ 51

The core library that many of the ODK tools are built around. It's written in Java, implements the ODK XForms spec, and runs on mobile devices and cloud servers. ✨🏗✨

Python3 scripts to manipulate FASTA and FASTQ files

Assembly_improvement ⭐ 39

Improve the quality of a denovo assembly by scaffolding and gap filling

Pathogen Informatics Training ⭐ 38

de novo virus assembler of Illumina paired reads

Commcare Android ⭐ 35

Offline First Android software client for CommCare, the world's largest platform for designing, managing, and deploying robust mobile applications to frontline workers worldwide

Xforms Spec ⭐ 29

The XForms-derived specification used in the ODK ecosystem. If you are interested in building a tool that is compliant with the forms rendered by ODK tools, this is the place to start. ✨⚒✨

Central Frontend ⭐ 29

Vue.js based frontend for ODK Central

Skunkworks Crow ⭐ 23

Skunkworks-crow is an Android app for sharing filled forms stored in ODK Collect from one device to another

Predict plasmids from uncorrected long read data

Gff3toembl ⭐ 20

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Itf_power_bi ⭐ 18

Contains functions for pulling publicly-available global COVID-19 case and testing data for analysis and populating a Power BI dashboard. ARCHIVED: See ITF-Dashboard Repository for further development

Geoprism Registry ⭐ 17

GeoPrism Registry is a system for curating interlinked data through time. It's the first framework implementing the Common Geo-Registry specification.

Plasmidtron ⭐ 16

Assembling the cause of phenotypes and genotypes from NGS data

Bio Tradis ⭐ 15

A set of tools to analyse the output from TraDIS analyses

Mlst_check ⭐ 14

Multilocus sequence typing by blast using the schemes from PubMLST

k-mer based Pipeline to identify the Serotype from Illumina NGS reads

Saffrontree ⭐ 14

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Lodestone ⭐ 11

Mycobacterial pipeline

Awesome Digital Global Health ⭐ 11

A curated list of awesome Digital Global Health resources and software.

ODK Validate is a Java application for confirming that a form is valid and compliant with the ODK XForms specification. Contribute and make the world a better place! ✨🔍✨

Albatradis ⭐ 7

Comparative TraDIS analysis

Anaerobic Digestion and Pasteurization Latrine (ADPL)

1-38 of 38 search results

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