Awesome Open Source

Programming Languages

Search results for genotyping

20 search results found

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Paragraph ⭐ 140

Graph realignment tools for structural variants

Cellsnp Lite ⭐ 89

Efficient genotyping bi-allelic SNPs on single cells

Nullarbor ⭐ 80

💾 📃 "Reads to report" for public health and clinical microbiology

Bayestyper ⭐ 52

A method for variant graph genotyping based on exact alignment of k-mers

Circle Map ⭐ 39

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

Danbing Tk ⭐ 18

Toolkit for VNTR genotyping and repeat-pan genome graph construction

Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates

Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

Indelpost ⭐ 11

Python library for simple and complex indels.

A simple python library to identify the most likely strain from the population

An efficient genetic data imputation pipeline

genotyping by Mapping-free ALternate-allele detection of known VAriants

Massgenotyping ⭐ 7

Python package for microsatellite genotyping from highly multiplexed amplicon sequencing data

One-step genotyping software using a long-read sequencer

emm Automatic Isolate Labeller

CONGA: COpy Number Genotyping in Ancient genomes and low-coverage sequencing data

Svjedi Graph ⭐ 5

SV genotyper for long reads with a variation graph

Related Searches

Python Genotyping (8)

Bioinformatics Genotyping (8)

C Plus Plus Genotyping (6)

Variants Genotyping (6)

Vcf Genotyping (6)

Variant Calling Genotyping (5)

Genome Genotyping (5)

Genomics Genotyping (4)

Sequencing Genotyping (4)

Structural Variation Genotyping (4)

1-20 of 20 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.