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18 search results found

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences

Awesome Structural Bioinformatics ⭐ 54

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

Deep Proteomics ⭐ 33

EzAAI - High Throughput Prokaryotic AAI Calculator

Feature Annotation Location Description Ontology

Nmdc Schema ⭐ 23

This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.

Pythomics ⭐ 16

A library to assist with a variety of -omic analyses. Included are tools for proteomics, transcriptomics, and genomics.

Genomic and Proteomic data exploration and pattern mining

Enrich_omics ⭐ 15

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

BACNET is a Java based platform to develop website for multi-omics analysis

Sequence Database Curator ⭐ 10

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

Generator Biojs Webcomponents ⭐ 7

Generate all the boilerplate for your next BioJS tool!

Phage Host Prediction ⭐ 7

Published in PLOS ONE. We show that using embeddings of receptor-binding proteins presents improvements over handcrafted genomic and protein sequence features for phage-host interaction prediction — with the highest performance obtained using the transformer-based protein language model ProtT5

Pyfeat 2.x ⭐ 6

Biological Feature Representation Tool form the Sequences

Biocmeetup ⭐ 6

Wikigenomesbase ⭐ 5

A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.

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