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Search results for bioinformatics proteomics
bioinformatics
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proteomics
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55 search results found
Containers
⭐
621
Bioinformatics containers
Pygeno
⭐
242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Lightdock
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234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Sage
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173
Proteomics search & quantification so fast that it feels like magic
Teachingmaterial
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161
Various teaching material
Alphapept
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136
A modular, python-based framework for mass spectrometry. Powered by nbdev.
Msnbase
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115
Base Classes and Functions for Mass Spectrometry and Proteomics
Philosopher
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104
A complete toolkit for shotgun proteomics data analysis
Famsa
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101
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Plass
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99
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
Msfragger
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83
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
Pyfeat
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68
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
Awesome Structural Bioinformatics
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54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Omiclearn
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50
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
Peptide Shaker
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41
Interpretation of proteomics identification results
Searchgui
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36
Highly adaptable common interface for proteomics search and de novo engines
Pdv
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35
PDV: an integrative proteomics data viewer
Mokapot
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31
Fast and flexible semi-supervised learning for peptide detection in Python
Deeprtplus
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30
Deep (Transfer) Learning for Peptide Retention Time Prediction
Directlfq
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27
Fast and accurate label-free quantification for small and very large numbers of proteomes
Causalpath
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27
A project for exploring differentially active signaling paths related to proteomics datasets
Compomics Utilities
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26
Open source Java library for computational proteomics
Exon
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20
Exon is an OLAP query engine specifically for biology and life science applications.
Plink2
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17
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
Pyascore
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16
A python package for fast post translational modification localization, powered by Cython.
Normalyzerde
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14
Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
Artms
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13
Analytical R Tools for Mass Spectrometry
Pfind3
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12
Bacnet
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12
BACNET is a Java based platform to develop website for multi-omics analysis
Mmtf Proteomics
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11
Methods for mapping proteomics data on 3D protein structure.
Proloc
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11
A unifying bioinformatics framework for organelle proteomics
Biojs Frontend
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11
Frontend repository for BioJS.
Pomashiny
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11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
Photon
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11
PHOsphoproteomic dissecTiOn using Networks
Sequence Database Curator
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10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Pymultiomics
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9
Python toolbox for multi-omics data mapping and analysis
Lgatto.github.io
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8
My github page
Specter
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8
Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
Curve_curator
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7
Analysis platform for large-scale dose-dependent data
Generator Biojs Webcomponents
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7
Generate all the boilerplate for your next BioJS tool!
Phage Host Prediction
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7
Published in PLOS ONE. We show that using embeddings of receptor-binding proteins presents improvements over handcrafted genomic and protein sequence features for phage-host interaction prediction — with the highest performance obtained using the transformer-based protein language model ProtT5
Nf Workflows
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7
Repository of Nextflow+BioContainers workflows
Msviz Backend
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6
A mass spectrometry visualization platform, developed by the PAF & Vital-IT, Swiss Institute of Bioinformatics.
Pyfeat 2.x
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6
Biological Feature Representation Tool form the Sequences
Perseusr
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6
R package for easy interop between Perseus and R
Spritz
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6
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
Pladipus
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5
Platform for Distributed Proteomics Software
Nf Encyclopedia
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5
A NextFlow pipeline for chromatogram library DIA proteomics workflows
Synthedia
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5
Create synthetic DIA LC-MS/MS for proteomics experiments
Peptide Shaker Online
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5
Web-based framework for interactive visual analysis of proteomics data
Wikigenomesbase
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5
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
Coxlab_bug_reporting
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5
MaxQuant and Perseus Bug Reporting
Peptacular
⭐
5
A spectacularly simple package for working with peptide sequences.
Ksea
⭐
5
Kinase Activity Predictions from shotgun proteomics
Spectrum_similarity
⭐
5
Scoring functions to compare MS/MS spectra
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1-55 of 55 search results
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