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Search results for genomics next generation sequencing

next-generation-sequencing x

36 search results found

Jvarkit ⭐ 440

Java utilities for Bioinformatics

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Rapid large-scale prokaryote pan genome analysis

Circlator ⭐ 193

A tool to circularize genome assemblies

Artemis ⭐ 191

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Snp Sites ⭐ 173

Finds SNP sites from a multi-FASTA alignment file

NGLess: NGS with less work

Antimicrobial Resistance Identification By Assembly

Gubbins ⭐ 133

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Assembly Stats ⭐ 92

Get assembly statistics from FASTA and FASTQ files

Czid Web ⭐ 75

Infectious Disease Sequencing Platform

Command line utility for manipulating Illumina-generated FASTQ files.

Htstream ⭐ 48

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

Python3 scripts to manipulate FASTA and FASTQ files

Assembly_improvement ⭐ 39

Improve the quality of a denovo assembly by scaffolding and gap filling

Pathogen Informatics Training ⭐ 38

de novo virus assembler of Illumina paired reads

An opinionated Cromwell orchestration manager.

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

Workflows ⭐ 28

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Create WDL documentation using Markdown.

Gff3toembl ⭐ 20

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Plasmidtron ⭐ 16

Assembling the cause of phenotypes and genotypes from NGS data

A Framework to call Structural Variants from NGS based datasets

Bio Tradis ⭐ 15

A set of tools to analyse the output from TraDIS analyses

A straightforward and complete next-generation sequencing read simulator

k-mer based Pipeline to identify the Serotype from Illumina NGS reads

Mlst_check ⭐ 14

Multilocus sequence typing by blast using the schemes from PubMLST

Saffrontree ⭐ 14

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Lodestone ⭐ 11

Mycobacterial pipeline

Ngsderive ⭐ 10

Forensic analysis tool useful in backwards computing information from next-generation sequencing data.

Copy number estimation of highly duplicated sequences

Rust Msbwt ⭐ 7

place for building up a msbwt resource in Rust

Albatradis ⭐ 7

Comparative TraDIS analysis

Genocraft ⭐ 5

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

Related Searches

Bioinformatics Genomics (544)

Python Genomics (522)

Genome Genomics (297)

R Genomics (218)

Sequencing Genomics (143)

Pipeline Genomics (125)

Jupyter Notebook Genomics (124)

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