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Search results for genomics genetics
genetics
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genomics
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41 search results found
Hail
⭐
905
Cloud-native genomic dataframes and batch computing
Intermine
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228
A powerful open source data warehouse system
Gwa_tutorial
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184
A comprehensive tutorial about GWAS and PRS
Msprime
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161
Simulate genealogical trees and genomic sequence data using population genetic models
Humanidiogramlibrary
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70
Resource of human chromosome schematics & images
Geneticsmakie.jl
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66
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
Awesome Genetics
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62
A curated list of awesome bioinformatics software.
Awesome Structural Bioinformatics
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54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Radiator
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53
RADseq Data Exploration, Manipulation and Visualization using R
Tomahawk
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39
Fast calculations of linkage-disequilibrium in large-scale human cohorts
Popgen.jl
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38
Population Genetics in Julia
Dee2
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37
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Gor
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37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
Variantkey
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34
Numerical Encoding for Human Genetic Variants
Bgdata
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30
A Suite of Packages for Analysis of Big Genomic Data
Genipe
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26
Genome-wide imputation pipeline
Fwdpy11
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25
Forward-time simulation in Python using fwdpp
Pgltools
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23
Paired Genomic Loci Tool Suite
Genomeanalysismodule
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21
Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
Iliad
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21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
Tachyon
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17
High-level API for storing and querying sequence variant data
Stackr
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17
stackr: an R package to run stacks software pipeline
Genoml2
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17
GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
Graphsim
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16
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
Agi Bio
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16
Genomic and Proteomic data exploration and pattern mining
Manhattan_generator
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15
Manhattan plot Generator
Pyplink
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14
Python module to read binary Plink files.
Region Plot
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12
A tool to plot significant regions of GWAS
Terapca
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12
TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.
Kgp
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12
1000 Genomes Project Metadata R Package
Seave
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12
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr
Bigtop
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11
A Manhattan plot in colorful virtual reality that adds frequency expression
Positive Selection
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10
Scripts and procedures for detecting positively selected genes and codons in primates
Sequence Database Curator
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10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Hat
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10
HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
Bedmatrix
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10
A matrix-like wrapper around PLINK .bed files
Algebra
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10
A Boolean Algebra for Genetic Variants
Pp
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6
Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
Kalis
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6
kalis: High Performance Li & Stephens Local Ancestry Inference
Banding Pattern Extraction
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6
Banding pattern extraction, and banding pattern segmentation mask generation for stained banded chromosome images.
Recimap
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5
Recimap (a reciprocal mapping tool) was developed as a bioinformatics command-line tool/pipeline to find rearrangements breakpoints between two closely related genomes.
Wikigenomesbase
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5
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
Aces
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5
ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, a graphical fragment assembly file, and a phylogenetic tree file.
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