Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for genome pan
genome
x
pan
x
25 search results found
Roary
⭐
219
Rapid large-scale prokaryote pan genome analysis
Get_homologues
⭐
98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Pan Genome Analysis
⭐
61
Processing pipeline for pan-genome visulization and exploration
Fripan
⭐
32
Interactive, web tool for exploring pan-genome of bacterial strains
Panseq
⭐
31
Pan-genomic sequence analysis
Danbing Tk
⭐
18
Toolkit for VNTR genotyping and repeat-pan genome graph construction
Etching
⭐
16
Ultra-fast, high-performing structural variation (SV) detector
Psi
⭐
15
Pan-genome Seed Index
Nf Anvio Pangenome
⭐
14
Analyze a set of genomes with the anvi'o pangenome pipeline
Hupan
⭐
14
Human pan-genome analysis pipeline
Ppspcp
⭐
13
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
Pangenomepipeline
⭐
12
PanGenomePipeline
Pangenome_graphs
⭐
9
Constructing pan genome graphs from "protein family" assignments
Pancancer Evaluation
⭐
9
Evaluating genome-wide prediction of driver mutations using pan-cancer data
Micropan
⭐
9
R package for microbial pangenomics
Sopang
⭐
9
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
Pan Genome Visualization
⭐
7
Darrc
⭐
7
DARRC is a new alignment-free and reference-free compression method that addresses the problem of pan-genome compression by encoding the sequences of a pan-genome as a guided de Bruijn Graph. The novelty of this method is its ability to incrementally update DARRC archives with new genome sequences without full decompression of the archive. DARRC can compress both single-end and paired-end read sequences of any length using all symbols of the IUPAC nucleotide code.
Mgsa
⭐
7
Oxford Plots
⭐
6
eHive pipeline to build pairwise Oxford plots
Roprofile
⭐
6
Generation of pan-genome profile files using Roary output.
Pangenome Pipelines
⭐
6
Pipelines for eukaryotic pangenome analysis from McCarthy & Fitzpatrick (2019).
Pangloss
⭐
6
Pangenome analysis of eukaryotes.
Gifrop
⭐
5
Genomic Islands From Roary Pangenomes
Pandelos
⭐
5
A dictionary-based method for pan-genomic contents discovery.
Related Searches
Python Genome (1,622)
R Genome (488)
Pipeline Genome (479)
Perl Genome (453)
Assembly Genome (449)
Genome Sequencing (438)
Genome Bioinformatics (436)
C Plus Plus Genome (404)
Genome Fasta (363)
Shell Genome (336)
1-25 of 25 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.