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Search results for genome long reads
genome
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long-reads
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12 search results found
Ngmlr
⭐
230
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Pepper
⭐
216
PEPPER-Margin-DeepVariant
Pipeline Structural Variation
⭐
87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Metacache
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49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Gala
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45
Long-reads Gap-free Chromosome-scale Assembler
Haslr
⭐
39
A fast tool for hybrid genome assembly of long and short reads
Straglr
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24
Tandem repeat expansion detection or genotyping from long-read alignments
Socru
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23
Order and orientation of complete bacterial genomes
Gssplayground
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21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
Svcollector
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17
Method to optimally select samples for validation and resequencing
Pyscaf
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12
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
Elba
⭐
10
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
Varathon
⭐
7
A scalable variant calling and benchmarking framework supporting both short and long reads.
Pseudoseq.jl
⭐
6
Fake genomes, fake sequencing, real insights.
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