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Search results for gene sets
gene-sets
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17 search results found
Ssgsea2.0
⭐
184
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Msigdbr
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52
MSigDB gene sets for multiple organisms in a tidy data format
Liger
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47
Lightweight Iterative Gene set Enrichment in R
Oncoenrichr
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46
Cancer-dedicated gene set interpretation
Biobombe
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44
BioBombe: Sequentially compressed gene expression features enhances biological signatures
Mytai
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33
Evolutionary Transcriptomics with R
Snpsea
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23
📊 Identify cell types and pathways affected by genetic risk loci.
Msigdf
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18
Molecular Signatures Database (MSigDB) in a data frame
Biocor
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14
Package to calculate functional similarity between genes https://biocor.llrs.dev
Cinar
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10
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
Enrichment_analysis
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10
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
Gsea Api
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8
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
Resvae
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7
resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
Cancer
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6
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Compath
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6
A web application for exploring, analyzing, and curating pathway databases
Covid19_crowd_library
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6
COVID-19 Crowd Generated Gene and Drug Set Library
Gseadv
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5
Package to analyse gene sets
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1-17 of 17 search results
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