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5 search results found

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

A unified array job submitter for LSF, SGE/UGE and Slurm

A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

Guppy_on_slurm ⭐ 10

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

4 Rna Seq ⭐ 7

A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds

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