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Search results for shell slurm
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slurm
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67 search results found
Hollywood
⭐
2,523
Deepops
⭐
1,074
Tools for building GPU clusters
Slurm_tools
⭐
350
My tools for the Slurm HPC workload manager
Juicer
⭐
313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Magpie
⭐
182
Magpie contains a number of scripts for running Big Data software in HPC environments, including Hadoop and Spark. There is support for Lustre, Slurm, Moab, Torque. LSF, Flux, and more.
Ubuntu Slurm
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151
Steps to create a small slurm cluster with GPU enabled nodes
Cluster Scripts
⭐
86
A collection of useful scripts, templates, and examples for clusters using SLURM https://slurm.schedmd.com/
Smk Simple Slurm
⭐
80
A simple Snakemake profile for Slurm without --cluster-config
Slurm For Ml
⭐
65
A Machine Learning workflow for Slurm.
Fgci Ansible
⭐
54
🔬 Collection of the Finnish Grid and Cloud Infrastructure Ansible playbooks
Stubl
⭐
51
SLURM Tools and UBiLities
Aws Plugin For Slurm
⭐
51
A sample integration of AWS services with SLURM
Slurm
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36
SLURM Example Scripts
Usegalaxy Playbook
⭐
31
Ansible Playbook for usegalaxy.org
Aws Parallelcluster Monitoring
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27
Monitoring Dashboard for AWS ParallelCluster
Hpc Submission Scripts
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26
Example job submission scripts for HPC systems (PBS and SLURM)
Qbatch
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24
Osaris
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21
Scripts to facilitate parallel InSAR processing and analysis of Sentinel-1 time series on HPC clusters based on GMTSAR and Slurm.
Slurm Bank
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19
SLURM Bank, a collection of wrapper scripts to give slurm GOLD like capabilities for managing resources.
Genome_assembly
⭐
17
Cluster_tutorials
⭐
16
Generic slurm tutorials that explain intricacies of the cluster as implemented
Shine Cluster
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15
Simple High performance Infrastructure for Neural network Experiments
Mushroom Rl Benchmark
⭐
14
Benchmarking suite for MushroomRL Deep RL algorithms
Graphtyper Pipelines
⭐
13
Recommended Graphtyper pipelines
Cuda_deployment_tutorial
⭐
13
Scripts to Deploy GPU Enabled Containers
Persist.jl
⭐
13
Persistent jobs
Launcher Scripts
⭐
13
A set of launcher scripts to be used with OAR for running jobs on the UL HPC platform
Spark Slurm
⭐
12
Tool for running/managing ad hoc spark clusters on a Slurm cluster
Hpc_r_workshop
⭐
11
Rna Seq With Reference Genome And Annotation
⭐
11
Container Education
⭐
11
Introduction to Singularity containers and the Slurm job scheduler.
Variant Calling Pipeline
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11
HPC based pipelines for variant calling using GATK
Sdag
⭐
11
Direct Acyclic Graph (DAG) Workflow Submitter for SLURM queueing system
Gromacs Slurm Openmpi Vagrant
⭐
11
An example 2-node cluster with a slurm controller for running gromacs
Aws Parallelcluster Post Install Scripts
⭐
11
Scripts to customize AWS ParallelCluster
Ood Images
⭐
10
Ostack Hpc
⭐
10
Enables HPC Environment in an OpenStack Cloud
Cpg_me
⭐
10
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
Spark On Slurm
⭐
10
Slurm Tutorial
⭐
10
Basic building blocks to create a Slurm cluster upon a PC using Docker
Guppy_on_slurm
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10
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
Pysbatch
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9
Submit slurm cluster job(Sbatch) inside python and avoid shell script. Submission cmd can be customized to add more options.
Hpcmeetsdocker
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9
Hpc Collab
⭐
9
This project provides provisioned HPC cluster models using underlying virtualization mechanisms.
Cluster_examples
⭐
9
Slurm Helper
⭐
8
Bunch of helper files for the Slurm resource manager
Pangeo Hpc Singularity
⭐
8
Scripts to run dask and jupyter lab on Singularity using the pangeo-notebook image
Hpc Infrastructure Scripts
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8
Scripts used in ILRI's research computing infrastructure
Hpc Savio Xsede
⭐
7
Multicore and multi-node parallel R computation via SLURM on the Savio cluster at UC Berkeley, plus XSEDE
Julia Slurm Example
⭐
7
DEPRECATED - see github.com/magerton/FARMTest.jl Example for running Julia with SLURM
Smanage
⭐
7
Slurm Manage for submitting and useful reporting on job arrays
Tigress Scripts
⭐
7
[Not Current] Setup and Example scripts for R-based HPC at Princeton University
Somalogic
⭐
6
SomaLogic data analysis
Io Watchdog
⭐
6
Monitor processes and parallel workloads for hangs
Domain Robustness
⭐
6
Sharc
⭐
6
Slurmdocker
⭐
6
A Slurm Docker image for use on AWS and/or locally
Ood Compose
⭐
6
Docker compose to bring up Open OnDemand with SLURM, Centos 7
Slurm_jupyter
⭐
6
Brief notes on how to run and access a jupyter notebook on a login node and a compute node using the SLURM cluster scheduler
Slurm17 Centos7
⭐
5
Installation for Slurm v17.11.7 on a CentOS 7 cluster
Slurm Buildkite
⭐
5
Run buildkite jobs on a slurm cluster
Slurm
⭐
5
Advanced Slurm workshop
Slurm_tools
⭐
5
Jetstream_elastic_slurm
⭐
5
Project to create a slurm headnode in JS with elastic computes.
Slurm
⭐
5
Slurm Pmix Test
⭐
5
The set of scripts for atomated testing of SLURM/pmix plugin
Slxc
⭐
5
SLURM in Linux Containers
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