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10 search results found

Quota Alignment ⭐ 44

Guided synteny alignment between duplicated genomes (within specified quota constraint)

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

a versatile toolkit for processing and analyzing diverse types of sequence data

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

Positive Selection ⭐ 10

Scripts and procedures for detecting positively selected genes and codons in primates

Digs Tool ⭐ 9

Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.

FastOMA is a scalable software package to infer orthology relationship.

CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology

Gluetools ⭐ 9

An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

Fishcomparativeatlas ⭐ 6

FishComparativeAtlas is a pipeline to trace the evolution of sister duplicated chromosomes derived from whole genome duplication in teleost genomes.

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