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Search results for epidemiology
epidemiology
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129 search results found
App
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2,127
COVID-19 App
Awesome Coronavirus
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1,537
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
Seirsplus
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571
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Epidemiology101
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267
Epidemic Modeling for Everyone
Corona Tracker
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237
An easy-to-use PWA to monitor the user's wellness and learn about COVID-19.
Epimodel
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236
Mathematical Modeling of Infectious Disease Dynamics
Covasim
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235
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
Chime
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207
COVID-19 Hospital Impact Model for Epidemics
Covid 19_unified Dataset
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168
Unified COVID-19 Dataset
Cholera
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138
R Package for Analyzing John Snow's 1854 Cholera Map
Circuitscape.jl
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118
Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
Zepid
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111
Epidemiology analysis package
Covid19 Sir
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103
CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
Pm_covid
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102
Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."
Cbs
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99
Red Cross: Community-Based Surveillance
Epirust
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96
An agent-based epidemiology simulation framework built in Rust
Riddle
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91
Race and ethnicity Imputation from Disease history with Deep LEarning
Covid 19 Data
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85
Unpivoted and cleaned data sets on the COVID-19 pandemic
Biodynamo
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78
BioDynaMo is a high-performance and modular, agent-based simulation platform.
Python For Epidemiologists
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76
Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3
Amr
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74
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
Simulator
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70
Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022.
Algebraicpetri.jl
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69
Build Petri net models compositionally
Pyro Cov
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68
Pyro models of SARS-CoV-2 variants
Emod
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60
Source files for building the IDM EMOD disease transmission model.
Sars2pack
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56
An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
Bio Epidemiology Ner
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55
Recognize bio-medical entities from a text corpus
Cov Spectrum Website
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54
A web platform to detect and analyze variants of SARS-CoV-2
Microbetrace
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53
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Simulation_virus_covid 19
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52
Simulating epidemics using Python
Farolcovid
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48
🚦🏥. Ferramenta de monitoramento do risco de colapso no sistema de saúde em municípios brasileiros com a Covid-19 • Monitoring tool & simulation of the risk of collapse in Brazilian municipalities' health system due to Covid-19
Geostan
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48
Bayesian spatial analysis
Epinowcast
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47
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
Kendrick
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46
Domain-Specific Modeling for Epidemiology
Spatiotemporal_datasets
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39
Spatiotemporal datasets collected for network science, deep learning and general machine learning research.
Chronological Map Phenotypes
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39
Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
Data2019ncov
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38
COVID-19 Pandemic Data R Package
Covid 19 Tracker
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36
This is an Covid-19 tracker especially made for India
List
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36
Repository for Global.health: a data science initiative to enable rapid sharing of trusted and open public health data to advance the response to infectious diseases.
Ecosistem.jl
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35
Julia package for ecosystem simulation
Mtbseq_source
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32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Covid19 Italy Integrated Surveillance Data
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30
COVID-19 integrated surveillance data provided by the Italian Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly moving averages.
Sitrep
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29
Report templates and helper functions for applied epidemiology
Reina Model
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29
Agent-based simulation model for COVID-19 spread in society and patient outcomes
Ska
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29
Split Kmer Analysis
Siminf
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29
A framework for data-driven stochastic disease spread simulations
June
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28
June is a framework for agent based modelling in an epidemiological and geographical context.
Flusight
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28
Influenza forecasts visualizer
Covid 19 Analysis
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27
Analysis with Covid-19 data
Taiwan Covid 19
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27
Analysis and visualization of Taiwan’s COVID-19 data
Individual
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27
R Package for individual based epidemiological models
Epitator
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27
EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.
Trackingr
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27
Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".
Bayes Chime
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25
Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.
Covid19 Analytics
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20
Analysis of the COVID19 outbreak in Brazil mainly through epidemic and hospitalization models, by the Health Analytics and Prospera consulting business units of Funcional Heatlh Tech.
Alertadengue
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20
Portal de dados do Projeto Alerta Dengue
Covid19_npi_china
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18
Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China
Epiparameter
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18
R package with epidemiological parameters for infectious diseases
Mcmasterpandemic
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18
SEIR+ model
Epimodelhiv
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17
Network Models of HIV Transmission Dynamics among MSM and Heterosexuals
Episimmer
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16
Episimmer is an Epidemic Simulation Framework for Decision Support. It is a highly flexible system that can be easily configured to help take decisions during an epidemic in closed communities like university campuses and gated communities.
Opqua
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16
Epidemiological modeling framework for pathogen population genetics and evolution.
R Outbreak Info
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16
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
National_causal
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15
Public Available Code to Conduct Analyses in "Evaluating the Impact of Long-term Exposure to Fine Particulate Matter on Mortality Among the Elderly."
Epispot
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15
A tool for modeling infectious diseases.
Cli Corona
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15
📈 Track COVID-19 (2019 novel Coronavirus) statistics via the command line.
Episuite
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15
A suite of tools for epidemiology in Python.
Epidemiology
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14
CRAN Task View: Epidemiology
Idmodelr
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14
Infectious disease model library and utilities
Ephtrackr
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14
R interface to the CDC National Public Health Tracking Network API
Epiestimapp
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14
Source code for the EpiEstim app.
R4epi
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13
Repository for the R for Epidemiology book
Icd_gems.jl
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13
ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).
Covid_19 Social Dist Simulation
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13
COVID-19 social distancing simulator
Epigraphdb R
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12
R package for epigraphdb
Transflow
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12
A snakemake workflow for WGS-based tuberculosis transmission analysis
Cfr
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11
R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
Epyc
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11
A versatile software for modeling epidemics on networks
Aweek
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11
Convert dates to arbitrary week definitions 📆
Epiabm
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10
Epidemiological agent-based modelling packages in both python and C++.
Covidsimulation
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10
Covid Epidemics Simulation with Simpy
Epicrop.jl
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10
Simulation modelling of crop diseases using a Healthy-Latent-Infectious-Postinfectious (HLIP) model in Julia
Estimater
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9
R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
Finalsize
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9
R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility
Missingdata
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9
missing data handing: visualize and impute
Global Late Blight Metamodelling
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9
R Scripts and supporting data for creating metamodels, as published in Ecosphere, and using them to generate global estimates of potato late blight risk based on climate data as published in Global Change Biology.
C View
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9
This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
Episensr
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9
Basic sensitivity analysis of epidemiological results in R
Covid 19
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9
Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.
Covid 19
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8
Info/Data (global/italy) about COVID-19. PR welcome for other countries.
Epi.branch.sim
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8
Stochastic epidemiological branching simulation
Epysurv
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8
Epidemiological surveillance in Python
Compaj
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8
Programming and numeric computing platform for math modeling and visualization with fully functional programming language
Reveal Frontend
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8
WebUI for the Reveal epidemiological surveillance platform
Serofoi
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8
Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
Epitrix
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8
Small Helpers and Tricks for Epidemics Analysis
Covid19rj
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7
Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.
Godatar
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7
R package for easier interactions with the Go.Data API
Spell Website
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7
Spatial Epidemiology Lab (Université Libre de Bruxelles)
Popepi
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7
An R package for epidemiological analysis using population data
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