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Search results for docker singularity

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Nextflow ⭐ 2,447

A DSL for data-driven computational pipelines

Hpc Container Maker ⭐ 419

HPC Container Maker

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

Container-native task automation engine.

Hoomd Blue ⭐ 298

Molecular dynamics and Monte Carlo soft matter simulation on GPUs.

Batch Shipyard ⭐ 270

Simplify HPC and Batch workloads on Azure

Docker2singularity ⭐ 266

A docker image for converting docker images to singularity images.

Docker Builds ⭐ 158

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

X11vnc Desktop ⭐ 107

Docker/Singularity image for Ubuntu with X11 and VNC

Parse Hipaa ⭐ 84

HIPAA & GDPR compliant ready parse-server with postgres/mongo, parse-hipaa-dashboard. Compatible with ParseCareKit

Nanopype ⭐ 78

Snakemake pipelines for nanopore sequencing data archiving and processing

Master_of_pores ⭐ 77

Nextflow pipeline for analysis of direct RNA Nanopore reads

Simplecontainergenerator.jl ⭐ 65

Create container images for using Julia packages (especially useful in environments without Internet access)

Github Ci ⭐ 56

An example GitHub Action (CI) to build a Singularity container

A Simple Way of Creating Job Workflows in Go running in Processes, Containers, Tasks, Pods, or Jobs

Close assembly gaps using long-reads at high accuracy.

Generic human DNA variant annotation pipeline

A novel composable rootless container system

COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.

Apptainer In Docker ⭐ 31

Apptainer in Docker!

Nf Hack17 Tutorial ⭐ 31

Nextflow basic tutorial for newbie users

scientific filesystem: a filesystem organization for scientific software and metadata

Containers Introduction Training ⭐ 24

Course website "Docker and Singularity for reproducible research: getting started with containers"

On-demand containers provisioning service

Dicom Containers ⭐ 21

singularity and Docker containers to easily get started with common dicom tools

Master of Pores 2

Porefile ⭐ 19

A Nextflow full-length 16S profiling pipeline for ONT reads

Spm Docker ⭐ 15

SPM Containers (Docker & Singularity)

Container_recipes ⭐ 14

Repository with all my container recipes 👩‍🍳

Grandeur ⭐ 13

UPHL's Reference Free Pipeline

Singularity Docker ⭐ 11

docker base images to provide release versions of Singularity

Singularity2docker ⭐ 11

convert a singularity image back to Docker, full circle! #containerfriends

A collection of Dockerfiles to facilitate reproducibility across computing environments.

Tostadas ⭐ 10

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

command line daemon for helping you out

uniformly interact with containerized environments across runners

Ngs580 Nf ⭐ 7

Target exome sequencing analysis for NYU NGS580 gene panel

Hinkskalle ⭐ 7

OCI + Singularity Container Registry

Singularity Dockerfiles ⭐ 7

Read-only mirror of the HCC singularity dockerfiles repo.

Phylonext ⭐ 7

A pipeline for phylogenetic diversity analysis of GBIF-mediated data

Command line tool for Wave containers provisioning service

Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives

Containers Benchs ⭐ 6

Just a bunch of methods and scripts to test performances within containers

Isc Tutorial ⭐ 6

ISC 2023 -- Getting Started with Containers on HPC

A Reproducible Untargeted Metabolomics Data Processing Pipeline

repository for collaborating with sherlock users to create containers

small docker tools for Singularity containers

Nextflow Scif ⭐ 5

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

Ca Server ⭐ 5

A Certificate Authority (CA) Server written in python using fastAPI

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