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Search results for singularity
singularity
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104 search results found
Singularity
⭐
2,500
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
Nextflow
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2,447
A DSL for data-driven computational pipelines
Apptainer
⭐
808
Apptainer: Application containers for Linux
Hpc Container Maker
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419
HPC Container Maker
Plip
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320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Popper
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299
Container-native task automation engine.
Hoomd Blue
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298
Molecular dynamics and Monte Carlo soft matter simulation on GPUs.
Batch Shipyard
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270
Simplify HPC and Batch workloads on Azure
Docker2singularity
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266
A docker image for converting docker images to singularity images.
Docker Builds
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158
📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
Sarek
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126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
X11vnc Desktop
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107
Docker/Singularity image for Ubuntu with X11 and VNC
Sregistry
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100
server for storage and management of singularity images
Singularity Hpc
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96
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
Singularity Cri
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93
The Singularity implementation of the Kubernetes Container Runtime Interface
Oneapi Containers
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93
Parse Hipaa
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84
HIPAA & GDPR compliant ready parse-server with postgres/mongo, parse-hipaa-dashboard. Compatible with ParseCareKit
Nanopype
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78
Snakemake pipelines for nanopore sequencing data archiving and processing
Master_of_pores
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77
Nextflow pipeline for analysis of direct RNA Nanopore reads
Wlm Operator
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75
Singularity implementation of k8s operator for interacting with SLURM.
Simplecontainergenerator.jl
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65
Create container images for using Julia packages (especially useful in environments without Internet access)
Github Ci
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56
An example GitHub Action (CI) to build a Singularity container
Naked Singularity
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56
A repository of definition files for bootstrapping Singularity containers around the software applications, frameworks, and libraries you need to run on high-performance computing systems.
Singularity Cli
⭐
54
streamlined singularity python client (spython) for singularity
Singularity
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54
A extremely fast ioc container for high performance applications
Nf Gwas
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52
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
Singularity Compose
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46
orchestration for singularity containers (under development)
Wfl
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45
A Simple Way of Creating Job Workflows in Go running in Processes, Containers, Tasks, Pods, or Jobs
Dentist
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44
Close assembly gaps using long-reads at high accuracy.
Gvanno
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43
Generic human DNA variant annotation pipeline
Forward
⭐
42
Port Forwarding Utility
Lpmx
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41
A novel composable rootless container system
Compss
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39
COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.
Singularity Tutorial
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39
Tutorial for using Singularity containers
Expfactory
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32
software to generate a reproducible container with a battery of experiments
Nf Hack17 Tutorial
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31
Nextflow basic tutorial for newbie users
Apptainer In Docker
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31
Apptainer in Docker!
Singularity Tutorial
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30
Singularity 101
Scif
⭐
30
scientific filesystem: a filesystem organization for scientific software and metadata
Robust Hexahedral Re Meshing
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29
Hex-mesh simplification and optimization
Containers Introduction Training
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24
Course website "Docker and Singularity for reproducible research: getting started with containers"
Wave
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23
On-demand containers provisioning service
Imoka
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22
interactive Multi Objective K-mer Analysis
Dicom Containers
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21
singularity and Docker containers to easily get started with common dicom tools
Mop2
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20
Master of Pores 2
Porefile
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19
A Nextflow full-length 16S profiling pipeline for ONT reads
Alphafold_singularity
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17
Singularity recipe for AlphaFold
Singularity Deepin
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16
Singularity容器运行微信
Spm Docker
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15
SPM Containers (Docker & Singularity)
Ngc Container Environment Modules
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15
Environment modules for NGC containers
Container_recipes
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14
Repository with all my container recipes 👩🍳
Sregistry Cli
⭐
14
Singularity Global Client for container management
Grandeur
⭐
13
UPHL's Reference Free Pipeline
Sci F.github.io
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12
The Scientific Filesystem Specification and Documentation
Jupyter
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12
official build specifications for jupyter
Genome Seek
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12
Clinical Whole Genome Sequencing Pipeline
Singularity Deploy
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11
Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
Dockers
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11
A collection of Dockerfiles to facilitate reproducibility across computing environments.
Gpu4singularity
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11
Add GPU support to your Singularity container!
Singularity2docker
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11
convert a singularity image back to Docker, full circle! #containerfriends
Singularity Docker
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11
docker base images to provide release versions of Singularity
Gomap Singularity
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10
GOMAP-Singularity is the containerized version of GOMAP
Community Collections
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10
Research Computing Framework Based on Singularity and Lmod
Singularity Catalog
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10
The Singularity Community Catalog of Singularity* recipe files.
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Singularity Shiny
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10
a quick shiny server in a Singularity Container. For @griznog!
Reat
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9
Robust Eukaryotic Annotation Toolkit
Singularity Scientific Example
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9
example analysis with Singularity Hub and Docker containers run on local HPC and cloud providers
Hpc Containers
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9
You should offer both Podman and Apptainer with name spaces on your HPC systems
Shpc Registry
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9
A remote registry for Singularity Registry HPC 🖊️
Singularity
⭐
9
NodeJS framework for services
Plantit
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9
Stools
⭐
8
singularity container tools for continuous integration and quality assessment
Rna Seek
⭐
8
A comprehensive quality-control and quantification RNA-seq pipeline
Singularity.sh
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8
👾 𝗼𝗹𝗱 𝗯𝗹𝗼𝗴 𝗼𝗻 𝘀𝗲𝗰𝘂𝗿𝗶𝘁𝘆, 𝗵𝗮𝗰𝗸𝗶𝗻𝗴, 𝗮𝗻𝗱 𝗺𝗮𝗰𝗵𝗶𝗻𝗲 𝗹𝗲𝗮𝗿𝗻𝗶𝗻𝗴
Singularity Ci
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8
example builders for Singularity images using continuous integration
Nmesos
⭐
7
CLI tool to deploy to Mesos using Singularity
Helpme
⭐
7
command line daemon for helping you out
Uppmax_in_a_can
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7
Using singularity to create a near-identical uppmax environment (experimental)
Phylonext
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7
A pipeline for phylogenetic diversity analysis of GBIF-mediated data
Vscode Singularity
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7
Provides syntax highlighting for Apptainer/Singularity definition files.
Denv
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7
uniformly interact with containerized environments across runners
Hinkskalle
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7
OCI + Singularity Container Registry
Wave Cli
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7
Command line tool for Wave containers provisioning service
Singularity Dockerfiles
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7
Read-only mirror of the HCC singularity dockerfiles repo.
Ngs580 Nf
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7
Target exome sequencing analysis for NYU NGS580 gene panel
Clowdr
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6
Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives
Isc Tutorial
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6
ISC 2023 -- Getting Started with Containers on HPC
Ai Workflows
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6
A collections of portable, real-world AI workflows for testing and benchmarking
Lxm3
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6
LXM3: XManager launch backend for HPC clusters
Containers Benchs
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6
Just a bunch of methods and scripts to test performances within containers
Singularity
⭐
6
A game being created as part of our university study plan. Look forward to it!
Sherlock
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5
repository for collaborating with sherlock users to create containers
Rump
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5
A Reproducible Untargeted Metabolomics Data Processing Pipeline
Ca Server
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5
A Certificate Authority (CA) Server written in python using fastAPI
Radio_transients
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5
Singularity containers with common radio transient search software.
Docker
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5
small docker tools for Singularity containers
Circle Ci
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5
example builder for Singularity containers using Circle Continuous Integration, circle-ci
Allmine
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5
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
Science Build Rules
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5
Utility for building reproducible scientific software using spack, singularity and anaconda
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