Awesome Open Source

Programming Languages

Search results for docker genome

46 search results found

Funannotate ⭐ 261

Eukaryotic Genome Annotation Pipeline

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support

Blobtools ⭐ 136

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Ampliconarchitect ⭐ 119

AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up so

Instrain ⭐ 104

Bioinformatics program inStrain

Peregrine ⭐ 94

Peregrine: Fast Genome Assembler Using SHIMMER Index

Bacannot ⭐ 85

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

MITObim - mitochondrial baiting and iterative mapping

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

A scalable bacterial genome assembly, annotation and analysis pipeline

Ngs Primerplex ⭐ 42

NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design

Metapalette ⭐ 41

Metagenomic profiling and phylogenetic distances via common kmers

Federating genomes with love (and synteny derived from functional annotations)

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Geniesys ⭐ 26

Genome Integrative Explorer System (GenIE-Sys)

Cgppindel ⭐ 25

Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel

ChIP-seq DC and QC Pipeline

Crisprdisco ⭐ 21

CRISPR discovery pipeline

Primerdesign ⭐ 20

A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants

A whole-genome and alignment-free prokaryotic phylogeny tool

Seqqscorer ⭐ 18

Nextflow Annotate ⭐ 18

Workflows I find helpful for fungal genome annotation

Tailseeker ⭐ 18

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Crg Course Nov16 ⭐ 17

Nextflow + Docker tutorial material

Cn_learn ⭐ 17

Ultra-fast, high-performing structural variation (SV) detector

Cld_docker ⭐ 16

Docker for CRISPR Library Designer | https://genomebiology.biomedcentral.com/articles/1

Crispritz ⭐ 14

Tool package to perform in-silico CRISPR analysis and assessment

Docker_bwa_aligner ⭐ 13

Docker containers that demonstrate a proof of concept bwa alignment workflow

Genomehubs ⭐ 12

Search and explore genomic metadata, Earth BioGenome Project progress and assembly features

Crisprviz ⭐ 11

A CRISPR repeat|spacer analysis tool

Bioinformatic Tools for study Evolution of metabolic diversity

Prymetime ⭐ 10

Pipeline for Recombinant Yeast genoMEs That Identifies Markers of Engineering

Docker Galaxy Genome Annotation ⭐ 10

🐳 Galaxy Docker Image with Tools for Genome Annotation

Docker_ucsc_genome_browser ⭐ 10

UCSC Genome Browser Docker Image

Distributed and cloud computing framework for vg

Hic Pipeline ⭐ 8

A pipeline for scaffolding a genome assembly using Hi-C

Stardocker ⭐ 8

Docker container for a Starcluster launcher that can be easily configured to run docker applications

Thinspace ⭐ 7

A taxonomy-free method to dereplicate massive genome collections

Read Mapping and Transcript Assembly

Crispr Meets Docker ⭐ 6

Docker images and IPython notebooks (bash kernel) for common CRISPR bioinformatic analysis: CRISPOR, CRISPResso and MAGeCK

Copy Number Variations (CNV) Simulator

Related Searches

Shell Docker (20,660)

Docker Dockerfile (16,395)

Python Docker (16,341)

Javascript Docker (10,426)

Golang Docker (7,702)

Php Docker (6,192)

Java Docker (6,071)

Docker Nginx (5,238)

Typescript Docker (4,630)

Docker Postgresql (4,363)

1-46 of 46 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.